Bra016270 (HEMB1, ALAD1)

Aliases : HEMB1, ALAD1

Description : porphobilinogen synthase *(HEMB). EC_4.2 carbon-oxygen lyase

Gene families : OG0007860 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Brassica rapa (Bra) PCC: Bra016270
Cluster	Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm): Cluster_93

Target	Alias	Description	ECC score	Gene Family Method	Actions
Spov3_chr5.00170	HEMB1, ALAD1	porphobilinogen synthase *(HEMB). EC_4.2 carbon-oxygen lyase	0.01	OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004655	porphobilinogen synthase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0016829	lyase activity	None	Extended
MF	GO:0016835	carbon-oxygen lyase activity	None	Extended
MF	GO:0016836	hydro-lyase activity	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0033013	tetrapyrrole metabolic process	None	Extended
BP	GO:0033014	tetrapyrrole biosynthetic process	IEA	Interproscan
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
MF	GO:0046872	metal ion binding	IEA	Interproscan
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0000155	phosphorelay sensor kinase activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0000166	nucleotide binding	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0000774	adenyl-nucleotide exchange factor activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0003735	structural constituent of ribosome	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0004096	catalase activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0004418	hydroxymethylbilane synthase activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0004673	protein histidine kinase activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0004812	aminoacyl-tRNA ligase activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0004820	glycine-tRNA ligase activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0005198	structural molecule activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0005524	ATP binding	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0005840	ribosome	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006082	organic acid metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006399	tRNA metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006412	translation	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006426	glycyl-tRNA aminoacylation	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006457	protein folding	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006518	peptide metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006520	amino acid metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0008483	transaminase activity	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0009059	macromolecule biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0016620	oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0016765	transferase activity, transferring alkyl or aryl (other than methyl) groups	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0016769	transferase activity, transferring nitrogenous groups	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0016775	phosphotransferase activity, nitrogenous group as acceptor	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0016874	ligase activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0016875	ligase activity, forming carbon-oxygen bonds	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0016903	oxidoreductase activity, acting on the aldehyde or oxo group of donors	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0017076	purine nucleotide binding	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0019752	carboxylic acid metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0019842	vitamin binding	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0019867	outer membrane	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0030170	pyridoxal phosphate binding	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0030554	adenyl nucleotide binding	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0032392	DNA geometric change	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0032508	DNA duplex unwinding	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0032553	ribonucleotide binding	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0032555	purine ribonucleotide binding	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0032559	adenyl ribonucleotide binding	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0034660	ncRNA metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0036094	small molecule binding	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0042802	identical protein binding	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0042803	protein homodimerization activity	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0043038	amino acid activation	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0043039	tRNA aminoacylation	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0043043	peptide biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0043168	anion binding	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0043228	non-membrane-bounded organelle	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0043232	intracellular non-membrane-bounded organelle	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0043436	oxoacid metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0043603	amide metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0043604	amide biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0044183	protein folding chaperone	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0044281	small molecule metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0051082	unfolded protein binding	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0051087	protein-folding chaperone binding	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0051276	chromosome organization	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0060590	ATPase regulator activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0070279	vitamin B6 binding	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0071103	DNA conformation change	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0097159	organic cyclic compound binding	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0097367	carbohydrate derivative binding	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0140098	catalytic activity, acting on RNA	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0140101	catalytic activity, acting on a tRNA	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0140299	small molecule sensor activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0140662	ATP-dependent protein folding chaperone	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:1901265	nucleoside phosphate binding	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:1901363	heterocyclic compound binding	IEP	Brassica rapa GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR001731	ALAD	102	419

External Links

No external refs found!

Bra016270 (HEMB1, ALAD1)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation