Bra014494 (EDA14, UTP11)

Aliases : EDA14, UTP11

Description : SSU processome assembly factor *(UTP11)

Gene families : OG0015121 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Brassica rapa (Bra) PCC: Bra014494
Cluster	Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm): Cluster_94

Type	GO Term	Name	Evidence	Source
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006364	rRNA processing	IEA	Interproscan
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016072	rRNA metabolic process	None	Extended
CC	GO:0030684	preribosome	None	Extended
CC	GO:0032040	small-subunit processome	IEA	Interproscan
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034470	ncRNA processing	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034660	ncRNA metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000049	tRNA binding	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0000166	nucleotide binding	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0000462	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0001522	pseudouridine synthesis	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0003674	molecular_function	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0003676	nucleic acid binding	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0003723	RNA binding	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0005488	binding	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0005515	protein binding	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0005524	ATP binding	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0005730	nucleolus	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0005759	mitochondrial matrix	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0005852	eukaryotic translation initiation factor 3 complex	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006334	nucleosome assembly	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006820	monoatomic anion transport	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0008134	transcription factor binding	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0009451	RNA modification	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0017076	purine nucleotide binding	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0019843	rRNA binding	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0030490	maturation of SSU-rRNA	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0030515	snoRNA binding	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0030554	adenyl nucleotide binding	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0031267	small GTPase binding	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0031974	membrane-enclosed lumen	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0032553	ribonucleotide binding	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0032555	purine ribonucleotide binding	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0032559	adenyl ribonucleotide binding	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0034728	nucleosome organization	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0036094	small molecule binding	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0042254	ribosome biogenesis	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0043168	anion binding	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0043226	organelle	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0043228	non-membrane-bounded organelle	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0043229	intracellular organelle	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0043232	intracellular non-membrane-bounded organelle	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0043233	organelle lumen	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0044085	cellular component biogenesis	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0051020	GTPase binding	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0065004	protein-DNA complex assembly	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0070013	intracellular organelle lumen	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0071840	cellular component organization or biogenesis	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0097159	organic cyclic compound binding	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0097367	carbohydrate derivative binding	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0110165	cellular anatomical entity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:1901265	nucleoside phosphate binding	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:1901363	heterocyclic compound binding	IEP	Brassica rapa GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR007144	SSU_processome_Utp11	11	228

External Links

No external refs found!

Bra014494 (EDA14, UTP11)

Expression Profile

Co-expression Networks

Functional Annotation