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  5. Bra013313

Bra013313


Description : not classified


Gene families : OG0002218 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0002218_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa (Bra) PCC: Bra013313
Cluster Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm): Cluster_211


Type GO Term Name Evidence Source
MF GO:0004386 helicase activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Brassica rapa GO terms from Neighborhoods
BP GO:0000375 RNA splicing, via transesterification reactions IEP Brassica rapa GO terms from Neighborhoods
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Brassica rapa GO terms from Neighborhoods
BP GO:0000394 RNA splicing, via endonucleolytic cleavage and ligation IEP Brassica rapa GO terms from Neighborhoods
BP GO:0000398 mRNA splicing, via spliceosome IEP Brassica rapa GO terms from Neighborhoods
MF GO:0003723 RNA binding IEP Brassica rapa GO terms from Neighborhoods
MF GO:0003972 RNA ligase (ATP) activity IEP Brassica rapa GO terms from Neighborhoods
MF GO:0004176 ATP-dependent peptidase activity IEP Brassica rapa GO terms from Neighborhoods
MF GO:0004222 metalloendopeptidase activity IEP Brassica rapa GO terms from Neighborhoods
MF GO:0005337 nucleoside transmembrane transporter activity IEP Brassica rapa GO terms from Neighborhoods
MF GO:0005488 binding IEP Brassica rapa GO terms from Neighborhoods
MF GO:0005524 ATP binding IEP Brassica rapa GO terms from Neighborhoods
BP GO:0006388 tRNA splicing, via endonucleolytic cleavage and ligation IEP Brassica rapa GO terms from Neighborhoods
BP GO:0006396 RNA processing IEP Brassica rapa GO terms from Neighborhoods
BP GO:0006790 sulfur compound metabolic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0006807 nitrogen compound metabolic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0008033 tRNA processing IEP Brassica rapa GO terms from Neighborhoods
MF GO:0008237 metallopeptidase activity IEP Brassica rapa GO terms from Neighborhoods
BP GO:0008380 RNA splicing IEP Brassica rapa GO terms from Neighborhoods
MF GO:0008452 RNA ligase activity IEP Brassica rapa GO terms from Neighborhoods
BP GO:0008612 peptidyl-lysine modification to peptidyl-hypusine IEP Brassica rapa GO terms from Neighborhoods
BP GO:0015858 nucleoside transport IEP Brassica rapa GO terms from Neighborhoods
BP GO:0015931 nucleobase-containing compound transport IEP Brassica rapa GO terms from Neighborhoods
MF GO:0015932 nucleobase-containing compound transmembrane transporter activity IEP Brassica rapa GO terms from Neighborhoods
BP GO:0016226 iron-sulfur cluster assembly IEP Brassica rapa GO terms from Neighborhoods
MF GO:0016462 pyrophosphatase activity IEP Brassica rapa GO terms from Neighborhoods
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Brassica rapa GO terms from Neighborhoods
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Brassica rapa GO terms from Neighborhoods
MF GO:0016886 ligase activity, forming phosphoric ester bonds IEP Brassica rapa GO terms from Neighborhoods
MF GO:0016887 ATP hydrolysis activity IEP Brassica rapa GO terms from Neighborhoods
MF GO:0017069 snRNA binding IEP Brassica rapa GO terms from Neighborhoods
MF GO:0017070 U6 snRNA binding IEP Brassica rapa GO terms from Neighborhoods
MF GO:0017076 purine nucleotide binding IEP Brassica rapa GO terms from Neighborhoods
MF GO:0017111 ribonucleoside triphosphate phosphatase activity IEP Brassica rapa GO terms from Neighborhoods
BP GO:0018205 peptidyl-lysine modification IEP Brassica rapa GO terms from Neighborhoods
MF GO:0030554 adenyl nucleotide binding IEP Brassica rapa GO terms from Neighborhoods
MF GO:0030623 U5 snRNA binding IEP Brassica rapa GO terms from Neighborhoods
BP GO:0031163 metallo-sulfur cluster assembly IEP Brassica rapa GO terms from Neighborhoods
MF GO:0032553 ribonucleotide binding IEP Brassica rapa GO terms from Neighborhoods
MF GO:0032555 purine ribonucleotide binding IEP Brassica rapa GO terms from Neighborhoods
MF GO:0032559 adenyl ribonucleotide binding IEP Brassica rapa GO terms from Neighborhoods
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Brassica rapa GO terms from Neighborhoods
MF GO:0036094 small molecule binding IEP Brassica rapa GO terms from Neighborhoods
MF GO:0043167 ion binding IEP Brassica rapa GO terms from Neighborhoods
MF GO:0043168 anion binding IEP Brassica rapa GO terms from Neighborhoods
BP GO:0043170 macromolecule metabolic process IEP Brassica rapa GO terms from Neighborhoods
MF GO:0046872 metal ion binding IEP Brassica rapa GO terms from Neighborhoods
MF GO:0046914 transition metal ion binding IEP Brassica rapa GO terms from Neighborhoods
BP GO:0051604 protein maturation IEP Brassica rapa GO terms from Neighborhoods
MF GO:0097159 organic cyclic compound binding IEP Brassica rapa GO terms from Neighborhoods
MF GO:0097367 carbohydrate derivative binding IEP Brassica rapa GO terms from Neighborhoods
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP Brassica rapa GO terms from Neighborhoods
BP GO:1901264 carbohydrate derivative transport IEP Brassica rapa GO terms from Neighborhoods
MF GO:1901265 nucleoside phosphate binding IEP Brassica rapa GO terms from Neighborhoods
MF GO:1901363 heterocyclic compound binding IEP Brassica rapa GO terms from Neighborhoods
MF GO:1901505 carbohydrate derivative transmembrane transporter activity IEP Brassica rapa GO terms from Neighborhoods
BP GO:1901642 nucleoside transmembrane transport IEP Brassica rapa GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR011709 DEAD-box_helicase_OB_fold 610 688
IPR007502 Helicase-assoc_dom 463 547
IPR001650 Helicase_C 268 400
No external refs found!