Mp7g17520.1 (ATRPABC24.3, NRPD5,...)

Aliases : ATRPABC24.3, NRPD5, NRPB5, RPB5A

Description : component *(NRPE5) of RNA polymerase V complex. component *(NRPD5) of RNA polymerase IV complex. component *(NRPC5) of RNA polymerase III complex. component *(NRPB5) of RNA polymerase II complex. component *(NRPA5) of RNA polymerase I complex

Gene families : OG0016930 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Marchantia polymorpha (Mpo) PCC: Mp7g17520.1
Cluster	Marchantia polymorpha (Mpo) Coexpression Clusters (HCCA Algorithm): Cluster_124

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006351	DNA-templated transcription	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	None	Extended
MF	GO:0016779	nucleotidyltransferase activity	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
CC	GO:0018995	host cellular component	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0032774	RNA biosynthetic process	None	Extended
CC	GO:0033643	host cell part	None	Extended
CC	GO:0033646	host intracellular part	None	Extended
CC	GO:0033647	host intracellular organelle	None	Extended
CC	GO:0033648	host intracellular membrane-bounded organelle	None	Extended
MF	GO:0034062	5'-3' RNA polymerase activity	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034654	nucleobase-containing compound biosynthetic process	None	Extended
CC	GO:0042025	host cell nucleus	IEA	Interproscan
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097747	RNA polymerase activity	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000270	peptidoglycan metabolic process	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0000394	RNA splicing, via endonucleolytic cleavage and ligation	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0001727	lipid kinase activity	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0003755	peptidyl-prolyl cis-trans isomerase activity	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0003852	2-isopropylmalate synthase activity	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0003972	RNA ligase (ATP) activity	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0004143	ATP-dependent diacylglycerol kinase activity	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0004176	ATP-dependent peptidase activity	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0004559	alpha-mannosidase activity	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0004571	mannosyl-oligosaccharide 1,2-alpha-mannosidase activity	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0004668	protein-arginine deiminase activity	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0005319	lipid transporter activity	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0005548	phospholipid transporter activity	IEP	Marchantia polymorpha GO terms from Neighborhoods
CC	GO:0005737	cytoplasm	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0006357	regulation of transcription by RNA polymerase II	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0006367	transcription initiation at RNA polymerase II promoter	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0006388	tRNA splicing, via endonucleolytic cleavage and ligation	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0006551	leucine metabolic process	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0006576	biogenic amine metabolic process	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0006595	polyamine metabolic process	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0006596	polyamine biosynthetic process	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0006869	lipid transport	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0006891	intra-Golgi vesicle-mediated transport	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0006897	endocytosis	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0007009	plasma membrane organization	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0007186	G protein-coupled receptor signaling pathway	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0007205	protein kinase C-activating G protein-coupled receptor signaling pathway	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0008194	UDP-glycosyltransferase activity	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0008380	RNA splicing	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0008452	RNA ligase activity	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0009081	branched-chain amino acid metabolic process	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0009082	branched-chain amino acid biosynthetic process	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0009098	leucine biosynthetic process	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0009254	peptidoglycan turnover	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0009308	amine metabolic process	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0009309	amine biosynthetic process	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0009445	putrescine metabolic process	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0009446	putrescine biosynthetic process	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0009891	positive regulation of biosynthetic process	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0009893	positive regulation of metabolic process	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0010557	positive regulation of macromolecule biosynthetic process	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0010604	positive regulation of macromolecule metabolic process	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0015748	organophosphate ester transport	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0015914	phospholipid transport	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0015923	mannosidase activity	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0015924	mannosyl-oligosaccharide mannosidase activity	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0016192	vesicle-mediated transport	IEP	Marchantia polymorpha GO terms from Neighborhoods
CC	GO:0016272	prefoldin complex	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0016757	glycosyltransferase activity	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0016787	hydrolase activity	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0016813	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0016859	cis-trans isomerase activity	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0016886	ligase activity, forming phosphoric ester bonds	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0017121	plasma membrane phospholipid scrambling	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0017128	phospholipid scramblase activity	IEP	Marchantia polymorpha GO terms from Neighborhoods
CC	GO:0019867	outer membrane	IEP	Marchantia polymorpha GO terms from Neighborhoods
CC	GO:0030173	obsolete integral component of Golgi membrane	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0030203	glycosaminoglycan metabolic process	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0031325	positive regulation of cellular metabolic process	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0031328	positive regulation of cellular biosynthetic process	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0032784	regulation of DNA-templated transcription elongation	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0032786	positive regulation of DNA-templated transcription, elongation	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0032968	positive regulation of transcription elongation by RNA polymerase II	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0034204	lipid translocation	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0034243	regulation of transcription elongation by RNA polymerase II	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0042401	biogenic amine biosynthetic process	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0045332	phospholipid translocation	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0045893	positive regulation of DNA-templated transcription	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0045935	positive regulation of nucleobase-containing compound metabolic process	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0045944	positive regulation of transcription by RNA polymerase II	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0046912	acyltransferase activity, acyl groups converted into alkyl on transfer	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0048518	positive regulation of biological process	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0048522	positive regulation of cellular process	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0051173	positive regulation of nitrogen compound metabolic process	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0051254	positive regulation of RNA metabolic process	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0061024	membrane organization	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0065008	regulation of biological quality	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0071949	FAD binding	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0097035	regulation of membrane lipid distribution	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0098657	import into cell	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0140303	intramembrane lipid transporter activity	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:1901135	carbohydrate derivative metabolic process	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:1902680	positive regulation of RNA biosynthetic process	IEP	Marchantia polymorpha GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR000783	RNA_pol_subH/Rpb5_C	136	208
IPR005571	RNA_pol_Rpb5_N	9	93

External Links

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Mp7g17520.1 (ATRPABC24.3, NRPD5,...)

Expression Profile

Co-expression Networks

Functional Annotation