Bra012132 (ICU2)


Aliases : ICU2

Description : catalytic component *(POLA1) of DNA polymerase alpha complex


Gene families : OG0012052 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa (Bra) PCC: Bra012132
Cluster Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm): Cluster_189


Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEA Interproscan
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0003887 DNA-directed DNA polymerase activity IEA Interproscan
BP GO:0006260 DNA replication IEA Interproscan
Type GO Term Name Evidence Source
CC GO:0000808 origin recognition complex IEP Brassica rapa GO terms from Neighborhoods
MF GO:0003682 chromatin binding IEP Brassica rapa GO terms from Neighborhoods
MF GO:0003896 DNA primase activity IEP Brassica rapa GO terms from Neighborhoods
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Brassica rapa GO terms from Neighborhoods
MF GO:0004748 ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor IEP Brassica rapa GO terms from Neighborhoods
MF GO:0005524 ATP binding IEP Brassica rapa GO terms from Neighborhoods
CC GO:0005634 nucleus IEP Brassica rapa GO terms from Neighborhoods
CC GO:0005694 chromosome IEP Brassica rapa GO terms from Neighborhoods
BP GO:0006269 DNA replication, synthesis of RNA primer IEP Brassica rapa GO terms from Neighborhoods
BP GO:0006270 DNA replication initiation IEP Brassica rapa GO terms from Neighborhoods
BP GO:0006275 regulation of DNA replication IEP Brassica rapa GO terms from Neighborhoods
BP GO:0006996 organelle organization IEP Brassica rapa GO terms from Neighborhoods
MF GO:0008168 methyltransferase activity IEP Brassica rapa GO terms from Neighborhoods
BP GO:0009262 deoxyribonucleotide metabolic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0009263 deoxyribonucleotide biosynthetic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0010639 negative regulation of organelle organization IEP Brassica rapa GO terms from Neighborhoods
BP GO:0016043 cellular component organization IEP Brassica rapa GO terms from Neighborhoods
BP GO:0016070 RNA metabolic process IEP Brassica rapa GO terms from Neighborhoods
MF GO:0016725 oxidoreductase activity, acting on CH or CH2 groups IEP Brassica rapa GO terms from Neighborhoods
MF GO:0016728 oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor IEP Brassica rapa GO terms from Neighborhoods
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Brassica rapa GO terms from Neighborhoods
MF GO:0017076 purine nucleotide binding IEP Brassica rapa GO terms from Neighborhoods
BP GO:0018130 heterocycle biosynthetic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0019438 aromatic compound biosynthetic process IEP Brassica rapa GO terms from Neighborhoods
MF GO:0030554 adenyl nucleotide binding IEP Brassica rapa GO terms from Neighborhoods
BP GO:0032392 DNA geometric change IEP Brassica rapa GO terms from Neighborhoods
BP GO:0032508 DNA duplex unwinding IEP Brassica rapa GO terms from Neighborhoods
MF GO:0032553 ribonucleotide binding IEP Brassica rapa GO terms from Neighborhoods
MF GO:0032555 purine ribonucleotide binding IEP Brassica rapa GO terms from Neighborhoods
MF GO:0032559 adenyl ribonucleotide binding IEP Brassica rapa GO terms from Neighborhoods
BP GO:0032774 RNA biosynthetic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0032780 negative regulation of ATP-dependent activity IEP Brassica rapa GO terms from Neighborhoods
CC GO:0032991 protein-containing complex IEP Brassica rapa GO terms from Neighborhoods
BP GO:0033043 regulation of organelle organization IEP Brassica rapa GO terms from Neighborhoods
BP GO:0033044 regulation of chromosome organization IEP Brassica rapa GO terms from Neighborhoods
MF GO:0034062 5'-3' RNA polymerase activity IEP Brassica rapa GO terms from Neighborhoods
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP Brassica rapa GO terms from Neighborhoods
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Brassica rapa GO terms from Neighborhoods
CC GO:0042555 MCM complex IEP Brassica rapa GO terms from Neighborhoods
CC GO:0042575 DNA polymerase complex IEP Brassica rapa GO terms from Neighborhoods
BP GO:0043086 negative regulation of catalytic activity IEP Brassica rapa GO terms from Neighborhoods
MF GO:0043167 ion binding IEP Brassica rapa GO terms from Neighborhoods
MF GO:0043168 anion binding IEP Brassica rapa GO terms from Neighborhoods
CC GO:0043226 organelle IEP Brassica rapa GO terms from Neighborhoods
CC GO:0043227 membrane-bounded organelle IEP Brassica rapa GO terms from Neighborhoods
CC GO:0043229 intracellular organelle IEP Brassica rapa GO terms from Neighborhoods
CC GO:0043231 intracellular membrane-bounded organelle IEP Brassica rapa GO terms from Neighborhoods
BP GO:0043462 regulation of ATP-dependent activity IEP Brassica rapa GO terms from Neighborhoods
CC GO:0043625 delta DNA polymerase complex IEP Brassica rapa GO terms from Neighborhoods
BP GO:0044092 negative regulation of molecular function IEP Brassica rapa GO terms from Neighborhoods
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Brassica rapa GO terms from Neighborhoods
MF GO:0044877 protein-containing complex binding IEP Brassica rapa GO terms from Neighborhoods
BP GO:0048478 obsolete replication fork protection IEP Brassica rapa GO terms from Neighborhoods
BP GO:0048519 negative regulation of biological process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0048523 negative regulation of cellular process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0050790 regulation of catalytic activity IEP Brassica rapa GO terms from Neighborhoods
BP GO:0051052 regulation of DNA metabolic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0051095 regulation of helicase activity IEP Brassica rapa GO terms from Neighborhoods
BP GO:0051097 negative regulation of helicase activity IEP Brassica rapa GO terms from Neighborhoods
BP GO:0051128 regulation of cellular component organization IEP Brassica rapa GO terms from Neighborhoods
BP GO:0051129 negative regulation of cellular component organization IEP Brassica rapa GO terms from Neighborhoods
BP GO:0051276 chromosome organization IEP Brassica rapa GO terms from Neighborhoods
CC GO:0061695 transferase complex, transferring phosphorus-containing groups IEP Brassica rapa GO terms from Neighborhoods
MF GO:0061731 ribonucleoside-diphosphate reductase activity IEP Brassica rapa GO terms from Neighborhoods
BP GO:0065009 regulation of molecular function IEP Brassica rapa GO terms from Neighborhoods
BP GO:0071103 DNA conformation change IEP Brassica rapa GO terms from Neighborhoods
BP GO:0071840 cellular component organization or biogenesis IEP Brassica rapa GO terms from Neighborhoods
MF GO:0097367 carbohydrate derivative binding IEP Brassica rapa GO terms from Neighborhoods
MF GO:0097747 RNA polymerase activity IEP Brassica rapa GO terms from Neighborhoods
BP GO:1901362 organic cyclic compound biosynthetic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:1905462 regulation of DNA duplex unwinding IEP Brassica rapa GO terms from Neighborhoods
BP GO:1905463 negative regulation of DNA duplex unwinding IEP Brassica rapa GO terms from Neighborhoods
BP GO:1905774 regulation of DNA helicase activity IEP Brassica rapa GO terms from Neighborhoods
BP GO:1905775 negative regulation of DNA helicase activity IEP Brassica rapa GO terms from Neighborhoods
BP GO:2001251 negative regulation of chromosome organization IEP Brassica rapa GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR015088 Znf_DNA-dir_DNA_pol_B_alpha 1021 1223
IPR006133 DNA-dir_DNA_pol_B_exonuc 61 455
IPR006134 DNA-dir_DNA_pol_B_multi_dom 521 982
No external refs found!