Mp1g22190.1

Description : EC_5.4 intramolecular transferase. TruA-type tRNA pseudouridine synthase

Gene families : OG0048952 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Marchantia polymorpha (Mpo) PCC: Mp1g22190.1
Cluster	Marchantia polymorpha (Mpo) Coexpression Clusters (HCCA Algorithm): Cluster_78

Type	GO Term	Name	Evidence	Source
BP	GO:0001522	pseudouridine synthesis	IEA	Interproscan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009451	RNA modification	IEA	Interproscan
MF	GO:0009982	pseudouridine synthase activity	IEA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016853	isomerase activity	None	Extended
MF	GO:0016866	intramolecular transferase activity	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000009	alpha-1,6-mannosyltransferase activity	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0000030	mannosyltransferase activity	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0003677	DNA binding	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0003697	single-stranded DNA binding	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0003746	translation elongation factor activity	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0003856	3-dehydroquinate synthase activity	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0003909	DNA ligase activity	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0003911	DNA ligase (NAD+) activity	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0003916	DNA topoisomerase activity	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0004376	glycolipid mannosyltransferase activity	IEP	Marchantia polymorpha GO terms from Neighborhoods
CC	GO:0005737	cytoplasm	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0006259	DNA metabolic process	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0006265	DNA topological change	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0006396	RNA processing	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0006414	translational elongation	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0006497	protein lipidation	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0006505	GPI anchor metabolic process	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0006506	GPI anchor biosynthetic process	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0006643	membrane lipid metabolic process	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0006650	glycerophospholipid metabolic process	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0006661	phosphatidylinositol biosynthetic process	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0006664	glycolipid metabolic process	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0008168	methyltransferase activity	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0008173	RNA methyltransferase activity	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0008897	holo-[acyl-carrier-protein] synthase activity	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0009072	aromatic amino acid metabolic process	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0009073	aromatic amino acid family biosynthetic process	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0009247	glycolipid biosynthetic process	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0016740	transferase activity	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0016741	transferase activity, transferring one-carbon groups	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0016780	phosphotransferase activity, for other substituted phosphate groups	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0016886	ligase activity, forming phosphoric ester bonds	IEP	Marchantia polymorpha GO terms from Neighborhoods
CC	GO:0030684	preribosome	IEP	Marchantia polymorpha GO terms from Neighborhoods
CC	GO:0032040	small-subunit processome	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0042802	identical protein binding	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0044249	cellular biosynthetic process	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0045017	glycerolipid biosynthetic process	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0046467	membrane lipid biosynthetic process	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0046474	glycerophospholipid biosynthetic process	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0046486	glycerolipid metabolic process	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0046488	phosphatidylinositol metabolic process	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0070403	NAD+ binding	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0071103	DNA conformation change	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0140097	catalytic activity, acting on DNA	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0140640	catalytic activity, acting on a nucleic acid	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:1901576	organic substance biosynthetic process	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:1903509	liposaccharide metabolic process	IEP	Marchantia polymorpha GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR020097	PsdUridine_synth_TruA_a/b_dom	341	445

External Links

No external refs found!

Mp1g22190.1

Expression Profile

Co-expression Networks

Functional Annotation