Coexpression cluster: Cluster_78 (Marchantia polymorpha (Mpo) Coexpression Clusters (HCCA Algorithm))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0098703 calcium ion import across plasma membrane 2.41% (2/83) 7.87 1.8e-05 0.000346
GO:0098739 import across plasma membrane 2.41% (2/83) 7.87 1.8e-05 0.000346
GO:0099587 inorganic ion import across plasma membrane 2.41% (2/83) 7.87 1.8e-05 0.000346
GO:0097553 calcium ion transmembrane import into cytosol 2.41% (2/83) 7.87 1.8e-05 0.000346
GO:0015085 calcium ion transmembrane transporter activity 2.41% (2/83) 7.87 1.8e-05 0.000346
GO:0000428 DNA-directed RNA polymerase complex 2.41% (2/83) 7.87 1.8e-05 0.000346
GO:0070588 calcium ion transmembrane transport 2.41% (2/83) 7.87 1.8e-05 0.000346
GO:0006816 calcium ion transport 2.41% (2/83) 7.87 1.8e-05 0.000346
GO:0005262 calcium channel activity 2.41% (2/83) 7.87 1.8e-05 0.000346
GO:0055029 nuclear DNA-directed RNA polymerase complex 2.41% (2/83) 7.87 1.8e-05 0.000346
GO:0098659 inorganic cation import across plasma membrane 2.41% (2/83) 7.87 1.8e-05 0.000346
GO:0005666 RNA polymerase III complex 2.41% (2/83) 7.87 1.8e-05 0.000346
GO:0006139 nucleobase-containing compound metabolic process 12.05% (10/83) 2.39 2e-05 0.00035
GO:0032774 RNA biosynthetic process 6.02% (5/83) 3.8 3e-05 0.000496
GO:0090304 nucleic acid metabolic process 10.84% (9/83) 2.47 3.4e-05 0.000535
GO:0006725 cellular aromatic compound metabolic process 12.05% (10/83) 2.25 4.7e-05 0.000616
GO:0046483 heterocycle metabolic process 12.05% (10/83) 2.25 4.7e-05 0.000616
GO:0006383 transcription by RNA polymerase III 2.41% (2/83) 7.29 5.4e-05 0.00064
GO:0019438 aromatic compound biosynthetic process 7.23% (6/83) 3.23 4.4e-05 0.000651
GO:0018130 heterocycle biosynthetic process 7.23% (6/83) 3.18 5.3e-05 0.000664
GO:1901360 organic cyclic compound metabolic process 12.05% (10/83) 2.2 6.2e-05 0.000706
GO:1901362 organic cyclic compound biosynthetic process 7.23% (6/83) 3.05 8.6e-05 0.000933
GO:0006351 DNA-templated transcription 4.82% (4/83) 4.01 0.00011 0.001057
GO:0098657 import into cell 2.41% (2/83) 6.87 0.000108 0.001072
GO:0030880 RNA polymerase complex 2.41% (2/83) 6.87 0.000108 0.001072
GO:0003677 DNA binding 8.43% (7/83) 2.6 0.000157 0.001445
GO:0003676 nucleic acid binding 13.25% (11/83) 1.81 0.000276 0.002453
GO:0034654 nucleobase-containing compound biosynthetic process 7.23% (6/83) 3.56 1.2e-05 0.002983
GO:0034641 cellular nitrogen compound metabolic process 12.05% (10/83) 1.85 0.000444 0.003808
GO:0061695 transferase complex, transferring phosphorus-containing groups 2.41% (2/83) 5.87 0.000497 0.004124
GO:0005261 monoatomic cation channel activity 2.41% (2/83) 5.7 0.000637 0.005117
GO:0016070 RNA metabolic process 7.23% (6/83) 2.37 0.001094 0.008515
GO:0016570 histone modification 2.41% (2/83) 5.17 0.001365 0.010301
GO:0006281 DNA repair 3.61% (3/83) 3.57 0.002059 0.015081
GO:0044249 cellular biosynthetic process 8.43% (7/83) 1.96 0.002129 0.015147
GO:0033554 cellular response to stress 3.61% (3/83) 3.46 0.002599 0.016179
GO:0140513 nuclear protein-containing complex 3.61% (3/83) 3.46 0.002599 0.016179
GO:0051716 cellular response to stimulus 3.61% (3/83) 3.46 0.002599 0.016179
GO:0006974 DNA damage response 3.61% (3/83) 3.46 0.002599 0.016179
GO:0044271 cellular nitrogen compound biosynthetic process 7.23% (6/83) 2.15 0.002375 0.016426
GO:0043687 post-translational protein modification 3.61% (3/83) 3.39 0.002961 0.017983
GO:1901576 organic substance biosynthetic process 8.43% (7/83) 1.82 0.003743 0.022192
GO:0009059 macromolecule biosynthetic process 6.02% (5/83) 2.18 0.00498 0.028838
GO:1901702 salt transmembrane transporter activity 2.41% (2/83) 4.17 0.005487 0.031051
GO:0005216 monoatomic ion channel activity 2.41% (2/83) 4.01 0.006798 0.036797
GO:0009058 biosynthetic process 8.43% (7/83) 1.66 0.006755 0.037379
GO:1990234 transferase complex 2.41% (2/83) 3.96 0.007263 0.038481
GO:0046500 S-adenosylmethionine metabolic process 1.2% (1/83) 6.87 0.008529 0.03933
GO:0016593 Cdc73/Paf1 complex 1.2% (1/83) 6.87 0.008529 0.03933
GO:0003725 double-stranded RNA binding 1.2% (1/83) 6.87 0.008529 0.03933
GO:0005759 mitochondrial matrix 1.2% (1/83) 6.87 0.008529 0.03933
GO:0004478 methionine adenosyltransferase activity 1.2% (1/83) 6.87 0.008529 0.03933
GO:0006556 S-adenosylmethionine biosynthetic process 1.2% (1/83) 6.87 0.008529 0.03933
GO:0005634 nucleus 3.61% (3/83) 2.9 0.00763 0.03958
GO:0097159 organic cyclic compound binding 19.28% (16/83) 0.91 0.009643 0.042875
GO:1901363 heterocyclic compound binding 19.28% (16/83) 0.91 0.009643 0.042875
GO:0016787 hydrolase activity 10.84% (9/83) 1.25 0.012948 0.046059
GO:0043138 3'-5' DNA helicase activity 1.2% (1/83) 6.29 0.012767 0.046073
GO:0006368 transcription elongation by RNA polymerase II 1.2% (1/83) 6.29 0.012767 0.046073
GO:0070013 intracellular organelle lumen 1.2% (1/83) 6.29 0.012767 0.046073
GO:0043233 organelle lumen 1.2% (1/83) 6.29 0.012767 0.046073
GO:0031974 membrane-enclosed lumen 1.2% (1/83) 6.29 0.012767 0.046073
GO:0006354 DNA-templated transcription elongation 1.2% (1/83) 6.29 0.012767 0.046073
GO:0006741 NADP biosynthetic process 1.2% (1/83) 6.29 0.012767 0.046073
GO:0070403 NAD+ binding 1.2% (1/83) 6.29 0.012767 0.046073
GO:0042802 identical protein binding 1.2% (1/83) 6.29 0.012767 0.046073
GO:0003951 NAD+ kinase activity 1.2% (1/83) 6.29 0.012767 0.046073
GO:0008023 transcription elongation factor complex 1.2% (1/83) 6.29 0.012767 0.046073
GO:0098655 monoatomic cation transmembrane transport 2.41% (2/83) 3.48 0.013909 0.048102
GO:0098662 inorganic cation transmembrane transport 2.41% (2/83) 3.48 0.013909 0.048102
GO:0006259 DNA metabolic process 3.61% (3/83) 2.7 0.011136 0.048647
GO:0034220 monoatomic ion transmembrane transport 2.41% (2/83) 3.44 0.014547 0.049621
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_236 0.006 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_255 0.006 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_170 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_239 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_127 0.006 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Marchantia polymorpha Marchantia polymorpha (Mpo) Coexpression Clusters (HCCA Algorithm) Cluster_41 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Marchantia polymorpha Marchantia polymorpha (Mpo) Coexpression Clusters (HCCA Algorithm) Cluster_130 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Marchantia polymorpha Marchantia polymorpha (Mpo) Coexpression Clusters (HCCA Algorithm) Cluster_151 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Sequences (83) (download table)

InterPro Domains

GO Terms

Family Terms