Spov3_chr6.02865 (FTSH5, VAR1)

Aliases : FTSH5, VAR1

Description : protease *(FtsH1/5). component *(FtsH1/2/5/6/8) of FtsH plastidial protease complexes

Gene families : OG0065666 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Spinacia oleracea (Sol) PCC: Spov3_chr6.02865
Cluster	Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm): Cluster_41

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004175	endopeptidase activity	None	Extended
MF	GO:0004176	ATP-dependent peptidase activity	IEA	Interproscan
MF	GO:0004222	metalloendopeptidase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
BP	GO:0006508	proteolysis	IEA	Interproscan
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008233	peptidase activity	None	Extended
MF	GO:0008237	metallopeptidase activity	None	Extended
MF	GO:0016462	pyrophosphatase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	None	Extended
MF	GO:0016887	ATP hydrolysis activity	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0017111	ribonucleoside triphosphate phosphatase activity	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
MF	GO:0140657	ATP-dependent activity	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0000049	tRNA binding	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0003755	peptidyl-prolyl cis-trans isomerase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0003873	6-phosphofructo-2-kinase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0004177	aminopeptidase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0004356	glutamine synthetase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0004427	inorganic diphosphate phosphatase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0004618	phosphoglycerate kinase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0004751	ribose-5-phosphate isomerase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0004807	triose-phosphate isomerase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0006000	fructose metabolic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0006082	organic acid metabolic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0006091	generation of precursor metabolites and energy	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0006520	amino acid metabolic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0006536	glutamate metabolic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0006537	glutamate biosynthetic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0006541	glutamine metabolic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0006542	glutamine biosynthetic process	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0008443	phosphofructokinase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0008652	amino acid biosynthetic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0009052	pentose-phosphate shunt, non-oxidative branch	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0009064	glutamine family amino acid metabolic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0009084	glutamine family amino acid biosynthetic process	IEP	Spinacia oleracea GO terms from Neighborhoods
CC	GO:0009521	photosystem	IEP	Spinacia oleracea GO terms from Neighborhoods
CC	GO:0009523	photosystem II	IEP	Spinacia oleracea GO terms from Neighborhoods
CC	GO:0009654	photosystem II oxygen evolving complex	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0015930	glutamate synthase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0015979	photosynthesis	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0016053	organic acid biosynthetic process	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0016211	ammonia ligase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0016491	oxidoreductase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0016620	oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0016638	oxidoreductase activity, acting on the CH-NH2 group of donors	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0016655	oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0016774	phosphotransferase activity, carboxyl group as acceptor	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0016811	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0016851	magnesium chelatase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0016853	isomerase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0016859	cis-trans isomerase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0016860	intramolecular oxidoreductase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0016861	intramolecular oxidoreductase activity, interconverting aldoses and ketoses	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0016874	ligase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0016880	acid-ammonia (or amide) ligase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0016903	oxidoreductase activity, acting on the aldehyde or oxo group of donors	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0019200	carbohydrate kinase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0019752	carboxylic acid metabolic process	IEP	Spinacia oleracea GO terms from Neighborhoods
CC	GO:0019898	extrinsic component of membrane	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0042586	peptide deformylase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0043436	oxoacid metabolic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0043648	dicarboxylic acid metabolic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0043650	dicarboxylic acid biosynthetic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0044281	small molecule metabolic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0044283	small molecule biosynthetic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0046394	carboxylic acid biosynthetic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0046855	obsolete inositol phosphate dephosphorylation	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0050661	NADP binding	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0051002	ligase activity, forming nitrogen-metal bonds	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0051003	ligase activity, forming nitrogen-metal bonds, forming coordination complexes	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0051287	NAD binding	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0051537	2 iron, 2 sulfur cluster binding	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0070402	NADPH binding	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:1901605	alpha-amino acid metabolic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:1901607	alpha-amino acid biosynthetic process	IEP	Spinacia oleracea GO terms from Neighborhoods
CC	GO:1902494	catalytic complex	IEP	Spinacia oleracea GO terms from Neighborhoods
CC	GO:1990204	oxidoreductase complex	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:2001070	starch binding	IEP	Spinacia oleracea GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR000642	Peptidase_M41	503	696
IPR003959	ATPase_AAA_core	290	421
IPR041569	AAA_lid_3	444	487

External Links

No external refs found!

Spov3_chr6.02865 (FTSH5, VAR1)

Expression Profile

Co-expression Networks

Functional Annotation