Spov3_chr6.02089 (ABCB1, PGP1, ATPGP1)

Aliases : ABCB1, PGP1, ATPGP1

Description : subfamily ABCB transporter

Gene families : OG0001724 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0001724_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Spinacia oleracea (Sol) PCC: Spov3_chr6.02089
Cluster	Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm): Cluster_129

Target	Alias	Description	ECC score	Gene Family Method	Actions
Lsat_1_v5_gn_1_52361.1	ABCB1, PGP1, ATPGP1	subfamily ABCB transporter	0.01	OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005215	transporter activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006810	transport	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0015399	primary active transmembrane transporter activity	None	Extended
CC	GO:0016020	membrane	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0022804	active transmembrane transporter activity	None	Extended
MF	GO:0022857	transmembrane transporter activity	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0042626	ATPase-coupled transmembrane transporter activity	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0055085	transmembrane transport	IEA	Interproscan
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140359	ABC-type transporter activity	IEA	Interproscan
MF	GO:0140657	ATP-dependent activity	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000159	protein phosphatase type 2A complex	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0003779	actin binding	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0003824	catalytic activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0003980	UDP-glucose:glycoprotein glucosyltransferase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0004435	phosphatidylinositol phospholipase C activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0004560	alpha-L-fucosidase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0004620	phospholipase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0004629	phospholipase C activity	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0005975	carbohydrate metabolic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0006486	protein glycosylation	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0006888	endoplasmic reticulum to Golgi vesicle-mediated transport	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0007010	cytoskeleton organization	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0007165	signal transduction	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0008081	phosphoric diester hydrolase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0008168	methyltransferase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0008171	O-methyltransferase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
CC	GO:0008287	protein serine/threonine phosphatase complex	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0015928	fucosidase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0016298	lipase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0016741	transferase activity, transferring one-carbon groups	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0016798	hydrolase activity, acting on glycosyl bonds	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0019208	phosphatase regulator activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0019888	protein phosphatase regulator activity	IEP	Spinacia oleracea GO terms from Neighborhoods
CC	GO:0030117	membrane coat	IEP	Spinacia oleracea GO terms from Neighborhoods
CC	GO:0030120	vesicle coat	IEP	Spinacia oleracea GO terms from Neighborhoods
CC	GO:0030127	COPII vesicle coat	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0035251	UDP-glucosyltransferase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0043413	macromolecule glycosylation	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0044238	primary metabolic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0048193	Golgi vesicle transport	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0050789	regulation of biological process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0050794	regulation of cellular process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0065007	biological regulation	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0070085	glycosylation	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0071704	organic substance metabolic process	IEP	Spinacia oleracea GO terms from Neighborhoods
CC	GO:1903293	phosphatase complex	IEP	Spinacia oleracea GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR011527	ABC1_TM_dom	89	360
IPR011527	ABC1_TM_dom	747	1013
IPR003439	ABC_transporter-like_ATP-bd	1085	1233
IPR003439	ABC_transporter-like_ATP-bd	429	578

External Links

No external refs found!

Spov3_chr6.02089 (ABCB1, PGP1, ATPGP1)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation