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  5. Spov3_chr6.00618

Spov3_chr6.00618


Description : not classified


Gene families : OG0019617 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Spinacia oleracea (Sol) PCC: Spov3_chr6.00618
Cluster Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm): Cluster_42


Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0000375 RNA splicing, via transesterification reactions IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0000398 mRNA splicing, via spliceosome IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0003674 molecular_function IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0003676 nucleic acid binding IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0003677 DNA binding IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0003682 chromatin binding IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0003712 transcription coregulator activity IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0003723 RNA binding IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0003724 RNA helicase activity IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0004175 endopeptidase activity IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0004176 ATP-dependent peptidase activity IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0004197 cysteine-type endopeptidase activity IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0004198 calcium-dependent cysteine-type endopeptidase activity IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0004222 metalloendopeptidase activity IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0004386 helicase activity IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0004842 ubiquitin-protein transferase activity IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0005488 binding IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0005515 protein binding IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0005516 calmodulin binding IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0005524 ATP binding IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0006355 regulation of DNA-templated transcription IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0006357 regulation of transcription by RNA polymerase II IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0006366 transcription by RNA polymerase II IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0006396 RNA processing IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0006401 RNA catabolic process IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0006402 mRNA catabolic process IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0006886 intracellular protein transport IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0006890 retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0008094 ATP-dependent activity, acting on DNA IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0008104 protein localization IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0008186 ATP-dependent activity, acting on RNA IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0008233 peptidase activity IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0008237 metallopeptidase activity IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0009889 regulation of biosynthetic process IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0010468 regulation of gene expression IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0015031 protein transport IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0016070 RNA metabolic process IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0016071 mRNA metabolic process IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0016192 vesicle-mediated transport IEP Spinacia oleracea GO terms from Neighborhoods
CC GO:0016592 mediator complex IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0016746 acyltransferase activity IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0016755 aminoacyltransferase activity IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0017069 snRNA binding IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0017070 U6 snRNA binding IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0017076 purine nucleotide binding IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0018024 obsolete histone lysine N-methyltransferase activity IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0019222 regulation of metabolic process IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0019787 ubiquitin-like protein transferase activity IEP Spinacia oleracea GO terms from Neighborhoods
CC GO:0030126 COPI vesicle coat IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0030554 adenyl nucleotide binding IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0030623 U5 snRNA binding IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0031323 regulation of cellular metabolic process IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0031326 regulation of cellular biosynthetic process IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0031491 nucleosome binding IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0032553 ribonucleotide binding IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0032555 purine ribonucleotide binding IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0032559 adenyl ribonucleotide binding IEP Spinacia oleracea GO terms from Neighborhoods
CC GO:0032991 protein-containing complex IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0033036 macromolecule localization IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0036094 small molecule binding IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0042393 histone binding IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0043167 ion binding IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0043168 anion binding IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0044877 protein-containing complex binding IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0045184 establishment of protein localization IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0050789 regulation of biological process IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0050794 regulation of cellular process IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0051252 regulation of RNA metabolic process IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0060255 regulation of macromolecule metabolic process IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0065007 biological regulation IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0070727 cellular macromolecule localization IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0080090 regulation of primary metabolic process IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0097159 organic cyclic compound binding IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0097367 carbohydrate derivative binding IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0140096 catalytic activity, acting on a protein IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0140097 catalytic activity, acting on DNA IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0140110 transcription regulator activity IEP Spinacia oleracea GO terms from Neighborhoods
CC GO:0140513 nuclear protein-containing complex IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0140657 ATP-dependent activity IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:1901265 nucleoside phosphate binding IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:1901363 heterocyclic compound binding IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:2001141 regulation of RNA biosynthetic process IEP Spinacia oleracea GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR009738 BAT2_N 1 47
No external refs found!