Spov3_chr4.01763 (DMS5, NRPD1B, NRPE1,...)

Aliases : DMS5, NRPD1B, NRPE1, DRD3, ATNRPD1B

Description : component *(NRPE1) of RNA polymerase V complex

Gene families : OG0003812 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0003812_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Spinacia oleracea (Sol) PCC: Spov3_chr4.01763
Cluster	Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm): Cluster_110

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006351	DNA-templated transcription	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	None	Extended
MF	GO:0016779	nucleotidyltransferase activity	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0032774	RNA biosynthetic process	None	Extended
MF	GO:0034062	5'-3' RNA polymerase activity	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034654	nucleobase-containing compound biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097747	RNA polymerase activity	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000148	1,3-beta-D-glucan synthase complex	IEP	Spinacia oleracea GO terms from Neighborhoods
CC	GO:0000151	ubiquitin ligase complex	IEP	Spinacia oleracea GO terms from Neighborhoods
CC	GO:0000152	nuclear ubiquitin ligase complex	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0000166	nucleotide binding	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0000184	nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0000271	polysaccharide biosynthetic process	IEP	Spinacia oleracea GO terms from Neighborhoods
CC	GO:0000786	nucleosome	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0000956	nuclear-transcribed mRNA catabolic process	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0003689	DNA clamp loader activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0003774	cytoskeletal motor activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0003777	microtubule motor activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0003843	1,3-beta-D-glucan synthase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0003909	DNA ligase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0003910	DNA ligase (ATP) activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0003968	RNA-dependent RNA polymerase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0004358	glutamate N-acetyltransferase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0004843	cysteine-type deubiquitinase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0005515	protein binding	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0005524	ATP binding	IEP	Spinacia oleracea GO terms from Neighborhoods
CC	GO:0005643	nuclear pore	IEP	Spinacia oleracea GO terms from Neighborhoods
CC	GO:0005663	DNA replication factor C complex	IEP	Spinacia oleracea GO terms from Neighborhoods
CC	GO:0005680	anaphase-promoting complex	IEP	Spinacia oleracea GO terms from Neighborhoods
CC	GO:0005694	chromosome	IEP	Spinacia oleracea GO terms from Neighborhoods
CC	GO:0005856	cytoskeleton	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0005976	polysaccharide metabolic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0006074	(1->3)-beta-D-glucan metabolic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0006075	(1->3)-beta-D-glucan biosynthetic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0006310	DNA recombination	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0006325	chromatin organization	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0006334	nucleosome assembly	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0006338	chromatin remodeling	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0006401	RNA catabolic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0006402	mRNA catabolic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0006525	arginine metabolic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0006526	arginine biosynthetic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0006913	nucleocytoplasmic transport	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0007017	microtubule-based process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0007018	microtubule-based movement	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0008017	microtubule binding	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0008064	regulation of actin polymerization or depolymerization	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0008080	N-acetyltransferase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0008092	cytoskeletal protein binding	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0008094	ATP-dependent activity, acting on DNA	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0009064	glutamine family amino acid metabolic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0009084	glutamine family amino acid biosynthetic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0009250	glucan biosynthetic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0009890	negative regulation of biosynthetic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0009892	negative regulation of metabolic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0010558	negative regulation of macromolecule biosynthetic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0010605	negative regulation of macromolecule metabolic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0010629	negative regulation of gene expression	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0015631	tubulin binding	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0016043	cellular component organization	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0016051	carbohydrate biosynthetic process	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0016307	obsolete phosphatidylinositol phosphate kinase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0016407	acetyltransferase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0016410	N-acyltransferase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0016579	protein deubiquitination	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0016758	hexosyltransferase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0016886	ligase activity, forming phosphoric ester bonds	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0017038	protein import	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0017056	structural constituent of nuclear pore	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0017076	purine nucleotide binding	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0019783	ubiquitin-like protein peptidase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0030554	adenyl nucleotide binding	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0030832	regulation of actin filament length	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0030833	regulation of actin filament polymerization	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0031267	small GTPase binding	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0031324	negative regulation of cellular metabolic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0031327	negative regulation of cellular biosynthetic process	IEP	Spinacia oleracea GO terms from Neighborhoods
CC	GO:0031461	cullin-RING ubiquitin ligase complex	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0032271	regulation of protein polymerization	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0032535	regulation of cellular component size	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0032553	ribonucleotide binding	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0032555	purine ribonucleotide binding	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0032559	adenyl ribonucleotide binding	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0032956	regulation of actin cytoskeleton organization	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0032970	regulation of actin filament-based process	IEP	Spinacia oleracea GO terms from Neighborhoods
CC	GO:0032991	protein-containing complex	IEP	Spinacia oleracea GO terms from Neighborhoods
CC	GO:0032993	protein-DNA complex	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0033043	regulation of organelle organization	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0034728	nucleosome organization	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0035251	UDP-glucosyltransferase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0036094	small molecule binding	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0043167	ion binding	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0043168	anion binding	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0043254	regulation of protein-containing complex assembly	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0043687	post-translational protein modification	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0043933	protein-containing complex organization	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0044042	glucan metabolic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0044087	regulation of cellular component biogenesis	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0046527	glucosyltransferase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0048519	negative regulation of biological process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0048523	negative regulation of cellular process	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0051020	GTPase binding	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0051128	regulation of cellular component organization	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0051169	nuclear transport	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0051273	beta-glucan metabolic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0051274	beta-glucan biosynthetic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0051493	regulation of cytoskeleton organization	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0065008	regulation of biological quality	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0070646	protein modification by small protein removal	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0070647	protein modification by small protein conjugation or removal	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0071824	protein-DNA complex organization	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0071840	cellular component organization or biogenesis	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0090066	regulation of anatomical structure size	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0097367	carbohydrate derivative binding	IEP	Spinacia oleracea GO terms from Neighborhoods
CC	GO:0098797	plasma membrane protein complex	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0101005	deubiquitinase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0110053	regulation of actin filament organization	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0140097	catalytic activity, acting on DNA	IEP	Spinacia oleracea GO terms from Neighborhoods
CC	GO:0140513	nuclear protein-containing complex	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0140657	ATP-dependent activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0140658	ATP-dependent chromatin remodeler activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:1901265	nucleoside phosphate binding	IEP	Spinacia oleracea GO terms from Neighborhoods
CC	GO:1902494	catalytic complex	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:1902903	regulation of supramolecular fiber organization	IEP	Spinacia oleracea GO terms from Neighborhoods
CC	GO:1990234	transferase complex	IEP	Spinacia oleracea GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR007081	RNA_pol_Rpb1_5	892	1312
IPR007066	RNA_pol_Rpb1_3	609	764
IPR007080	RNA_pol_Rpb1_1	173	424
IPR000722	RNA_pol_asu	452	606

External Links

No external refs found!

Spov3_chr4.01763 (DMS5, NRPD1B, NRPE1,...)

Expression Profile

Co-expression Networks

Functional Annotation