Spov3_chr4.01423 (EMB2247)

Aliases : EMB2247

Description : EC_6.1 ligase forming carbon-oxygen bond. valine-tRNA ligase

Gene families : OG0074293 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Spinacia oleracea (Sol) PCC: Spov3_chr4.01423
Cluster	Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm): Cluster_143

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	IEA	Interproscan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004812	aminoacyl-tRNA ligase activity	IEA	Interproscan
MF	GO:0004832	valine-tRNA ligase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005737	cytoplasm	IEA	Interproscan
BP	GO:0006082	organic acid metabolic process	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006399	tRNA metabolic process	None	Extended
BP	GO:0006418	tRNA aminoacylation for protein translation	IEA	Interproscan
BP	GO:0006438	valyl-tRNA aminoacylation	IEA	Interproscan
BP	GO:0006520	amino acid metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016874	ligase activity	None	Extended
MF	GO:0016875	ligase activity, forming carbon-oxygen bonds	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
BP	GO:0019752	carboxylic acid metabolic process	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034660	ncRNA metabolic process	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
BP	GO:0043038	amino acid activation	None	Extended
BP	GO:0043039	tRNA aminoacylation	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043436	oxoacid metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
MF	GO:0140101	catalytic activity, acting on a tRNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0001522	pseudouridine synthesis	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0003747	translation release factor activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0004618	phosphoglycerate kinase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0004813	alanine-tRNA ligase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0004814	arginine-tRNA ligase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0004820	glycine-tRNA ligase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0006090	pyruvate metabolic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0006096	glycolytic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0006400	tRNA modification	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0006415	translational termination	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0006419	alanyl-tRNA aminoacylation	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0006420	arginyl-tRNA aminoacylation	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0006426	glycyl-tRNA aminoacylation	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0006457	protein folding	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0008033	tRNA processing	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0008079	translation termination factor activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0008173	RNA methyltransferase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0008175	tRNA methyltransferase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0008176	tRNA (guanine-N7-)-methyltransferase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0008757	S-adenosylmethionine-dependent methyltransferase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0009451	RNA modification	IEP	Spinacia oleracea GO terms from Neighborhoods
CC	GO:0009523	photosystem II	IEP	Spinacia oleracea GO terms from Neighborhoods
CC	GO:0009654	photosystem II oxygen evolving complex	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0009982	pseudouridine synthase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0016423	tRNA (guanine) methyltransferase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0016774	phosphotransferase activity, carboxyl group as acceptor	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0016866	intramolecular transferase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0016879	ligase activity, forming carbon-nitrogen bonds	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0016884	carbon-nitrogen ligase activity, with glutamine as amido-N-donor	IEP	Spinacia oleracea GO terms from Neighborhoods
CC	GO:0019898	extrinsic component of membrane	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0022411	cellular component disassembly	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0032984	protein-containing complex disassembly	IEP	Spinacia oleracea GO terms from Neighborhoods
CC	GO:1990204	oxidoreductase complex	IEP	Spinacia oleracea GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR013155	M/V/L/I-tRNA-synth_anticd-bd	370	512
IPR019499	Val-tRNA_synth_tRNA-bd	577	640
IPR002300	aa-tRNA-synth_Ia	2	313

External Links

No external refs found!

Spov3_chr4.01423 (EMB2247)

Expression Profile

Co-expression Networks

Functional Annotation