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Heatmap: Cluster_235 (Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm))

View as: (view zlog-transformed or row-normalized)

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(Showing raw values)

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Gene
Light: 268 uE m-2 s-1
Light: 202.5 uE m-2 s-1 (Control)
Light: 135 uE m-2 s-1
Light: 67.5 uE m-2 s-1
Photoperiod: L24
Photoperiod: L20D4 (Control)
Photoperiod: L12D12
Photoperiod: L8D16
RBW: 4:1:1 (Control)
RBW: 4:1:0
RBW: 3:1:1
RBW: 3:1:0
Nitrogen: 0%
Nitrogen: 25%
Nitrogen: 50%
Nitrogen: 100% (Control)
Nitrogen: 150%
Phosphorous: 0%
Phosphorous: 25%
Phosphorous: 50%
Phosphorous: 100% (Control)
Phosphorous: 150%
Potassium: 0%
Potassium: 25%
Potassium: 50%
Potassium: 100% (Control)
Potassium: 150%
Temperature: 20°C
Temperature: 25°C (Control)
Temperature: 30°C
Temperature: 35°C
6.17 8.65 9.27 8.74 8.11 7.25 5.5 10.17 3.57 4.06 3.32 2.99 11.55 6.91 9.47 6.21 6.71 6.39 3.67 4.32 3.81 3.13 44.01 4.62 6.25 5.13 5.85 6.46 4.46 4.05 6.0
3.61 4.65 4.68 6.53 2.69 3.04 4.18 7.26 2.11 4.01 2.9 3.74 10.12 2.43 3.68 5.25 4.41 6.16 3.29 3.54 4.11 2.69 27.3 8.09 7.83 8.45 7.66 8.68 1.64 3.85 10.36
Bra000507 (FD3)
 1.54 1.76 1.35 3.08 0.26 0.68 2.69 6.82 0.86 1.27 1.33 1.28 9.39 1.77 4.57 1.91 1.49 2.72 0.57 0.85 1.61 0.81 52.59 5.54 5.54 6.92 5.66 5.37 1.95 3.57 5.24
Bra000929 (RPP1B)
 10.21 32.07 24.06 40.09 13.6 27.69 49.29 213.55 12.89 38.7 22.06 22.45 126.56 47.57 59.97 69.79 96.64 110.51 23.36 23.73 54.26 30.73 670.21 71.32 74.6 68.77 76.52 49.26 17.99 23.19 93.91
16.84 13.86 16.77 19.46 18.75 18.93 39.35 48.06 11.65 23.15 19.4 20.21 63.13 13.86 16.13 37.13 36.5 47.62 25.45 25.53 28.01 25.6 195.74 41.48 43.51 37.46 43.89 30.29 19.53 24.38 39.94
Bra001232 (NSN1)
 1.62 2.03 1.94 2.18 1.74 2.53 3.75 9.51 0.52 1.02 0.97 0.8 6.72 3.38 4.93 3.89 4.32 5.39 1.52 1.89 2.21 1.91 46.48 3.67 4.03 4.19 4.03 3.13 1.82 2.23 7.2
Bra001302 (SAC56)
 0.73 0.05 0.71 0.32 0.18 0.61 0.46 1.49 0.17 0.63 0.3 0.26 6.21 1.28 1.76 1.22 2.15 2.42 0.58 0.48 0.35 0.2 33.34 1.92 1.65 2.11 2.05 1.82 0.68 0.9 4.27
Bra002067 (PGIP1)
 0.12 0.0 0.77 0.43 0.29 0.11 0.73 0.14 0.0 1.58 0.39 0.0 0.29 0.0 0.75 0.34 0.29 1.17 0.09 0.43 0.0 0.35 20.39 0.0 0.03 0.26 0.11 0.0 0.0 1.26 0.73
4.69 5.17 5.62 4.78 5.75 5.62 4.04 6.11 3.71 3.13 3.18 3.16 7.08 6.76 7.45 5.58 4.9 5.38 3.84 3.65 4.05 3.75 24.52 5.18 5.66 5.26 5.89 5.56 4.93 4.45 7.65
Bra002429 (RER1)
 0.81 0.72 0.6 0.63 0.86 1.06 1.26 1.88 0.61 0.58 0.59 0.68 2.53 1.21 1.37 1.55 1.38 2.22 0.5 1.11 0.68 0.64 11.37 1.96 1.15 1.15 1.67 1.65 1.05 1.22 2.24
Bra002460 (RPL12C)
 0.91 0.45 0.79 1.37 1.74 2.86 11.68 17.38 2.98 4.46 3.12 4.41 43.27 8.11 8.89 14.71 15.13 22.06 4.25 5.76 5.41 6.92 181.5 6.06 6.43 5.55 5.21 5.57 1.48 3.04 16.12
9.89 13.26 14.23 18.62 28.69 41.59 36.13 74.26 25.43 33.08 25.4 28.15 155.18 52.64 75.96 69.9 54.03 104.62 30.71 39.2 55.25 40.09 645.47 48.54 39.55 43.81 41.21 31.11 20.41 23.13 53.25
2.68 9.44 7.99 12.69 2.74 5.6 15.3 26.83 2.36 5.31 3.63 4.91 69.92 10.17 18.92 29.19 23.17 54.54 8.85 9.01 10.83 9.95 150.78 14.61 16.32 21.2 17.36 12.47 3.13 6.14 28.82
1.07 0.72 0.66 0.56 1.61 1.65 1.34 2.59 0.42 0.6 0.4 0.48 2.57 1.95 2.31 1.8 1.71 3.2 0.48 0.83 1.07 1.0 18.05 1.06 0.87 0.64 1.13 0.66 0.49 0.53 1.91
0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.04 0.0 0.04 0.0 0.0 0.13 0.04 0.05 0.0 0.0 0.04 0.0 0.0 0.0 0.0 8.63 0.95 0.67 0.58 0.75 0.49 0.46 0.36 0.96
Bra004376 (CM3)
 0.14 0.11 0.17 0.25 0.09 0.13 0.14 0.18 0.06 0.17 0.14 0.16 0.33 0.11 0.14 0.17 0.28 0.41 0.23 0.11 0.22 0.11 2.68 0.19 0.3 0.24 0.31 0.24 0.13 0.23 0.44
Bra004458 (DIM1A)
 3.14 3.71 3.77 4.15 2.24 3.38 4.16 9.0 1.37 1.52 1.18 0.85 7.39 3.3 3.94 3.18 3.15 2.82 0.98 2.2 1.58 2.2 22.98 2.93 2.63 4.01 2.52 2.93 2.62 3.27 4.69
Bra006661 (ELONGATION FACTOR-TU FAMILY)
 11.02 17.5 14.25 22.5 9.87 13.62 20.65 36.71 9.47 13.97 13.37 13.74 51.5 18.86 21.73 39.16 28.24 29.59 12.73 21.58 26.81 18.45 118.18 25.93 32.54 24.56 26.35 25.94 13.78 16.36 30.29
8.43 15.24 15.14 20.02 13.73 12.1 17.07 19.44 3.63 5.62 5.66 3.85 34.91 9.94 13.05 18.89 17.18 19.56 6.46 8.31 11.09 8.34 139.65 17.85 12.91 19.29 17.7 11.29 6.05 8.71 29.9
8.98 10.73 7.76 17.99 8.69 12.91 17.02 22.77 3.74 3.9 3.01 5.57 26.01 14.83 21.55 16.54 13.25 21.31 6.22 10.3 8.69 6.95 106.72 17.64 20.83 23.39 16.66 16.05 6.69 8.88 22.59
Bra008463 (IMD2)
 24.65 34.07 35.15 31.29 26.37 27.56 29.47 39.03 21.56 32.93 31.76 31.51 59.42 25.54 35.96 41.71 40.44 42.84 26.82 32.31 35.66 33.37 93.11 43.38 44.27 44.01 43.34 45.83 24.86 30.18 41.7
17.17 26.21 37.26 39.13 19.82 24.52 28.74 58.02 10.38 16.81 11.53 14.82 81.63 23.64 40.74 47.62 48.59 31.87 15.16 22.81 24.59 20.58 282.45 44.7 49.72 53.53 51.33 35.71 16.4 21.25 62.55
8.73 15.57 23.43 25.73 19.91 20.84 46.29 60.65 10.08 25.86 12.55 17.56 130.85 19.08 41.04 46.65 49.99 56.9 17.56 25.21 49.03 23.84 316.34 46.83 45.67 56.8 54.33 34.6 13.26 19.74 55.92
5.64 6.79 7.66 4.62 5.27 6.43 6.56 14.1 4.23 3.05 2.95 3.27 10.13 7.66 13.49 7.07 5.23 9.93 3.92 6.83 4.61 3.09 39.09 7.88 7.77 8.47 7.74 10.49 5.54 8.82 12.93
Bra010435 (emb1027)
 0.24 0.35 0.29 0.27 0.52 0.47 0.2 0.47 0.2 0.07 0.11 0.21 0.94 0.97 0.88 0.35 0.4 0.39 0.16 0.17 0.3 0.16 9.13 0.2 0.14 0.1 0.16 0.17 0.14 0.22 0.57
Bra012012 (PGY1)
 17.84 22.1 27.48 22.7 15.36 13.78 15.21 25.54 6.88 9.88 9.76 8.39 31.73 17.43 19.49 18.3 17.24 21.11 9.15 11.63 12.88 13.36 89.84 18.08 17.88 19.6 21.2 19.37 13.49 14.67 22.13
Bra012013 (FD3)
 3.52 4.3 6.03 3.64 3.15 2.67 3.64 6.7 4.27 2.84 4.31 2.91 20.32 4.35 8.99 6.14 3.96 14.47 4.61 3.3 3.07 3.47 58.34 6.08 8.31 7.67 7.93 5.06 6.18 9.06 9.44
9.86 13.75 27.51 28.76 38.99 35.78 46.58 100.07 22.37 27.08 27.34 14.1 134.76 72.83 99.06 62.52 63.95 97.53 61.39 44.38 40.48 57.22 471.46 33.01 47.33 52.32 34.65 39.81 18.01 17.36 63.09
Bra014187 (TOM6)
 155.13 196.16 155.47 213.42 158.66 163.83 213.18 303.41 60.64 100.33 104.25 94.12 282.99 168.93 240.87 194.77 230.25 343.78 180.52 193.47 238.31 206.89 1439.24 206.25 195.47 180.56 177.42 116.53 75.71 86.78 166.47
Bra014334 (RPL7B)
 18.01 40.3 42.29 43.89 24.27 31.22 44.85 81.35 10.4 22.69 18.29 15.38 95.43 30.46 42.32 55.98 54.71 45.47 15.39 34.01 39.75 30.44 313.43 60.79 70.74 67.49 63.96 55.87 15.24 25.3 83.44
11.03 21.97 20.09 24.06 13.92 14.24 20.26 37.68 3.86 8.63 8.74 8.13 43.82 11.08 15.75 21.26 22.71 26.8 11.55 12.33 14.67 9.44 289.0 22.77 23.99 27.81 27.59 20.36 8.52 12.58 32.55
3.32 4.01 3.43 3.45 4.18 7.71 10.17 16.84 2.9 5.21 2.15 2.14 19.95 11.53 11.75 7.6 11.59 20.12 4.7 6.13 6.98 5.63 187.3 5.59 8.14 6.56 8.65 4.94 1.76 2.45 8.47
Bra018669 (ELONGATION FACTOR-TU FAMILY)
 89.72 111.29 62.9 90.37 95.09 98.83 96.56 119.88 61.88 57.11 59.02 56.28 155.25 91.62 135.41 146.2 141.99 71.59 55.75 77.46 103.33 58.75 1197.37 71.69 76.04 67.42 76.7 63.21 49.76 51.45 79.1
Bra018702 (GK)
 0.02 0.02 0.03 0.02 0.0 0.02 0.01 0.04 0.01 0.09 0.01 0.03 0.16 0.04 0.07 0.02 0.05 0.06 0.02 0.05 0.04 0.01 0.64 0.01 0.01 0.0 0.01 0.01 0.02 0.01 0.03
Bra019148 (FIB2)
 0.04 0.06 0.07 0.18 0.12 0.16 0.45 1.06 0.01 0.07 0.19 0.19 1.49 0.19 0.64 0.42 0.49 0.92 0.18 0.25 0.21 0.14 6.75 0.34 0.27 0.09 0.12 0.22 0.26 0.51 0.7
Bra022753 (CKG)
 0.49 1.05 1.52 2.2 0.62 1.24 5.67 5.46 1.74 3.49 2.72 3.01 9.7 3.62 4.82 5.61 5.97 6.18 2.76 4.08 3.18 4.28 62.16 7.72 6.07 8.43 3.84 3.99 2.22 1.95 7.45
0.06 0.06 0.11 0.09 0.26 0.91 0.74 1.65 0.43 0.15 0.13 0.3 1.91 1.49 3.1 0.84 0.65 2.64 0.51 0.37 0.25 0.4 16.13 0.67 0.64 0.43 0.74 0.43 0.47 0.34 1.45
0.71 1.0 0.54 1.47 1.45 0.51 2.29 7.08 0.95 0.13 0.39 0.76 11.58 3.08 2.85 2.17 3.11 1.96 2.0 2.49 1.36 1.38 59.05 4.24 3.57 3.56 2.35 2.73 0.85 1.22 3.9
Bra024895 (RPL7B)
 3.78 5.56 6.28 8.75 7.67 10.67 20.86 32.74 2.42 7.44 6.15 5.29 43.35 9.99 11.94 34.24 17.51 16.45 5.39 11.79 11.52 7.39 142.93 21.36 24.25 24.57 26.95 18.66 9.62 13.49 36.47
1.83 3.69 4.55 5.11 3.06 2.47 2.65 5.09 1.24 2.45 2.53 1.84 7.15 4.44 5.58 4.74 4.24 3.89 0.9 2.92 1.92 2.21 25.61 5.47 5.31 5.01 5.01 4.33 2.16 2.28 7.41
Bra030495 (RPP1C)
 6.03 8.43 9.67 11.49 15.76 15.93 18.39 11.63 8.19 7.68 5.71 4.91 15.54 17.62 20.95 14.16 8.77 14.72 10.67 15.12 14.15 8.31 131.9 21.61 20.32 18.19 21.7 13.16 10.43 12.2 18.95
Bra030546 (PHB2)
 10.35 15.97 13.07 13.26 10.86 14.66 13.36 14.88 5.81 12.09 9.99 7.93 20.29 13.14 19.88 20.25 18.31 20.99 11.32 12.62 16.02 14.74 102.5 16.67 17.27 15.26 16.95 11.95 6.05 7.9 15.32
Bra031602 (ELONGATION FACTOR-TU FAMILY)
 14.62 30.48 19.45 26.27 20.07 30.28 31.43 29.17 14.66 27.08 22.68 21.31 62.6 34.16 54.89 43.39 39.99 55.17 16.23 29.06 26.31 34.77 283.3 26.92 29.92 29.04 31.39 23.29 13.73 18.03 33.26
Bra031605 (ELONGATION FACTOR-TU FAMILY)
 47.51 72.08 49.0 52.07 76.13 102.38 64.99 65.75 49.25 61.95 59.77 54.26 110.07 125.71 161.27 86.69 81.43 86.84 45.15 59.7 62.57 69.86 837.53 57.8 57.97 49.77 56.26 51.1 39.88 40.69 58.1
14.38 16.72 16.33 14.45 26.83 19.97 31.96 33.68 9.46 8.56 10.97 11.12 33.22 26.44 37.12 17.59 16.41 21.35 10.43 15.79 15.19 14.91 147.64 30.82 25.36 28.85 27.22 35.87 23.35 18.18 33.64
4.88 3.72 7.6 10.67 2.43 3.68 7.38 25.23 3.55 4.54 4.67 3.21 17.6 15.66 12.2 8.32 4.85 11.42 6.28 9.22 6.52 3.87 128.39 14.3 14.11 17.4 15.66 13.17 5.85 6.64 21.98
Bra033149 (CBF5)
 0.13 0.18 0.21 0.85 0.7 1.63 0.28 2.4 0.17 0.18 0.17 0.18 4.87 0.84 2.66 1.34 0.98 3.41 0.38 0.65 1.41 0.62 29.41 1.85 1.68 1.1 1.17 1.48 0.66 0.87 2.77
0.48 1.43 1.02 3.88 1.52 1.35 5.82 24.08 2.81 1.76 2.13 1.95 17.14 0.53 1.83 4.82 6.44 5.01 2.71 2.69 5.31 2.84 79.66 5.18 4.66 4.04 3.82 5.92 1.53 2.89 6.84
Bra036475 (NOP10)
 7.53 13.77 11.64 7.68 7.03 29.0 10.74 26.32 9.92 10.6 7.42 5.22 43.92 20.05 34.39 23.57 22.58 66.97 11.83 14.97 19.03 8.0 379.23 4.71 12.29 13.89 15.55 7.44 6.85 14.02 28.76
15.38 50.45 49.86 61.3 26.89 44.69 66.37 97.18 5.28 20.14 21.92 23.3 162.96 27.4 39.63 85.02 73.7 74.66 26.66 32.93 68.46 55.25 394.44 61.83 77.19 80.01 70.22 47.17 18.09 23.08 74.1
Bra038742 (CTPS2)
 0.49 0.51 0.78 0.72 1.02 0.97 1.13 3.15 0.38 0.62 0.89 0.45 3.26 1.51 1.16 1.75 1.23 2.51 0.69 0.98 1.2 1.07 18.69 0.74 0.9 0.69 1.04 1.38 0.54 0.51 1.4
11.51 6.69 14.19 12.82 20.93 16.21 11.12 17.73 12.09 19.5 8.26 14.28 38.02 24.24 15.3 30.82 25.48 31.04 13.67 17.7 20.92 17.08 459.42 40.82 33.06 36.02 25.5 39.88 37.15 27.76 52.47
Bra040138 (RPL23)
 0.0 0.4 1.74 2.83 0.08 1.1 0.33 3.6 0.99 2.42 0.69 1.02 10.54 4.5 7.59 1.93 9.16 6.62 2.76 4.25 2.71 1.77 75.82 8.9 9.41 13.12 8.1 6.24 1.97 3.65 15.66

Details

Raw expression values (TPM normalized), Green cells indicate low expression and red high. (Dark gray cells indicate missing values)