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  5. Spov3_chr3.00883

Spov3_chr3.00883


Description : not classified


Gene families : OG0067162 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Spinacia oleracea (Sol) PCC: Spov3_chr3.00883
Cluster Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm): Cluster_116


Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0003677 DNA binding IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0003690 double-stranded DNA binding IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0003723 RNA binding IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0003916 DNA topoisomerase activity IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0004177 aminopeptidase activity IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0004252 serine-type endopeptidase activity IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0005488 binding IEP Spinacia oleracea GO terms from Neighborhoods
CC GO:0005694 chromosome IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0006139 nucleobase-containing compound metabolic process IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0006265 DNA topological change IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0006364 rRNA processing IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0006396 RNA processing IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0006725 cellular aromatic compound metabolic process IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0008033 tRNA processing IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0008235 metalloexopeptidase activity IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0008238 exopeptidase activity IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0010035 response to inorganic substance IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0010038 response to metal ion IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0016070 RNA metabolic process IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0016072 rRNA metabolic process IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0016756 glutathione gamma-glutamylcysteinyltransferase activity IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0019748 secondary metabolic process IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0019843 rRNA binding IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0030145 manganese ion binding IEP Spinacia oleracea GO terms from Neighborhoods
CC GO:0030684 preribosome IEP Spinacia oleracea GO terms from Neighborhoods
CC GO:0032040 small-subunit processome IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0034470 ncRNA processing IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0034641 cellular nitrogen compound metabolic process IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0034660 ncRNA metabolic process IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0042221 response to chemical IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0044550 secondary metabolite biosynthetic process IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0046483 heterocycle metabolic process IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0046937 phytochelatin metabolic process IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0046938 phytochelatin biosynthetic process IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0070006 metalloaminopeptidase activity IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0071103 DNA conformation change IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0090304 nucleic acid metabolic process IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0097159 organic cyclic compound binding IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:1901360 organic cyclic compound metabolic process IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:1901363 heterocyclic compound binding IEP Spinacia oleracea GO terms from Neighborhoods
CC GO:1990904 ribonucleoprotein complex IEP Spinacia oleracea GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_rpt 766 794
IPR002885 Pentatricopeptide_rpt 729 758
IPR002885 Pentatricopeptide_rpt 413 434
IPR002885 Pentatricopeptide_rpt 271 301
IPR002885 Pentatricopeptide_rpt 369 402
IPR002885 Pentatricopeptide_rpt 443 474
IPR002885 Pentatricopeptide_rpt 190 232
IPR002885 Pentatricopeptide_rpt 303 350
IPR002885 Pentatricopeptide_rpt 586 635
IPR002885 Pentatricopeptide_rpt 656 704
IPR002885 Pentatricopeptide_rpt 517 565
No external refs found!