Spov3_chr2.04096 (ATXPB1, XPB1)

Aliases : ATXPB1, XPB1

Description : component *(SSL2/XPB) of multifunctional TFIIh complex. component *(SSL2/XPB) of TFIIh basal transcription factor complex

Gene families : OG0002042 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0002042_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Spinacia oleracea (Sol) PCC: Spov3_chr2.04096
Cluster	Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm): Cluster_162

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0016787	hydrolase activity	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003723	RNA binding	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0004652	obsolete polynucleotide adenylyltransferase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0004843	cysteine-type deubiquitinase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0005543	phospholipid binding	IEP	Spinacia oleracea GO terms from Neighborhoods
CC	GO:0005643	nuclear pore	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0006354	DNA-templated transcription elongation	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0006368	transcription elongation by RNA polymerase II	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0006405	RNA export from nucleus	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0006406	mRNA export from nucleus	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0006631	fatty acid metabolic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0006633	fatty acid biosynthetic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0006913	nucleocytoplasmic transport	IEP	Spinacia oleracea GO terms from Neighborhoods
CC	GO:0008023	transcription elongation factor complex	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0008289	lipid binding	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0015931	nucleobase-containing compound transport	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0016053	organic acid biosynthetic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0016570	histone modification	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0016579	protein deubiquitination	IEP	Spinacia oleracea GO terms from Neighborhoods
CC	GO:0016593	Cdc73/Paf1 complex	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0016830	carbon-carbon lyase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0016831	carboxy-lyase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0016973	poly(A)+ mRNA export from nucleus	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0019783	ubiquitin-like protein peptidase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0032787	monocarboxylic acid metabolic process	IEP	Spinacia oleracea GO terms from Neighborhoods
CC	GO:0032991	protein-containing complex	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0043631	obsolete RNA polyadenylation	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0043687	post-translational protein modification	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0046394	carboxylic acid biosynthetic process	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0050080	malonyl-CoA decarboxylase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0050657	nucleic acid transport	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0050658	RNA transport	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0051028	mRNA transport	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0051168	nuclear export	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0051169	nuclear transport	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0051236	establishment of RNA localization	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0070646	protein modification by small protein removal	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0070647	protein modification by small protein conjugation or removal	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0072330	monocarboxylic acid biosynthetic process	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0101005	deubiquitinase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
CC	GO:0140513	nuclear protein-containing complex	IEP	Spinacia oleracea GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR006935	Helicase/UvrB_N	281	437
IPR032830	XPB/Ssl2_N	66	189
IPR032438	ERCC3_RAD25_C	463	711

External Links

No external refs found!

Spov3_chr2.04096 (ATXPB1, XPB1)

Expression Profile

Co-expression Networks

Functional Annotation