Spov3_chr2.02972 (TOZ)

Aliases : TOZ

Description : SSU processome assembly factor *(TOZ)

Gene families : OG0063177 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Spinacia oleracea (Sol) PCC: Spov3_chr2.02972
Cluster	Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm): Cluster_113

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006364	rRNA processing	IEA	Interproscan
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016072	rRNA metabolic process	None	Extended
CC	GO:0030684	preribosome	None	Extended
CC	GO:0032040	small-subunit processome	IEA	Interproscan
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034470	ncRNA processing	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034660	ncRNA metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0000462	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0003676	nucleic acid binding	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0003723	RNA binding	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0003922	GMP synthase (glutamine-hydrolyzing) activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0004175	endopeptidase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0004176	ATP-dependent peptidase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0004177	aminopeptidase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0004252	serine-type endopeptidase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0005524	ATP binding	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0005525	GTP binding	IEP	Spinacia oleracea GO terms from Neighborhoods
CC	GO:0005634	nucleus	IEP	Spinacia oleracea GO terms from Neighborhoods
CC	GO:0005730	nucleolus	IEP	Spinacia oleracea GO terms from Neighborhoods
CC	GO:0005759	mitochondrial matrix	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0006177	GMP biosynthetic process	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0008097	5S rRNA binding	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0008134	transcription factor binding	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0008168	methyltransferase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0008235	metalloexopeptidase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0009123	nucleoside monophosphate metabolic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0009124	nucleoside monophosphate biosynthetic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0009126	purine nucleoside monophosphate metabolic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0009127	purine nucleoside monophosphate biosynthetic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0009156	ribonucleoside monophosphate biosynthetic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0009161	ribonucleoside monophosphate metabolic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0009167	purine ribonucleoside monophosphate metabolic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0009168	purine ribonucleoside monophosphate biosynthetic process	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0016462	pyrophosphatase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0016741	transferase activity, transferring one-carbon groups	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0016884	carbon-nitrogen ligase activity, with glutamine as amido-N-donor	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0016887	ATP hydrolysis activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0017076	purine nucleotide binding	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0017111	ribonucleoside triphosphate phosphatase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0019001	guanyl nucleotide binding	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0019843	rRNA binding	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0030145	manganese ion binding	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0030490	maturation of SSU-rRNA	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0030515	snoRNA binding	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0030554	adenyl nucleotide binding	IEP	Spinacia oleracea GO terms from Neighborhoods
CC	GO:0031974	membrane-enclosed lumen	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0032553	ribonucleotide binding	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0032555	purine ribonucleotide binding	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0032559	adenyl ribonucleotide binding	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0032561	guanyl ribonucleotide binding	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0036094	small molecule binding	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0042254	ribosome biogenesis	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0043167	ion binding	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0043168	anion binding	IEP	Spinacia oleracea GO terms from Neighborhoods
CC	GO:0043226	organelle	IEP	Spinacia oleracea GO terms from Neighborhoods
CC	GO:0043227	membrane-bounded organelle	IEP	Spinacia oleracea GO terms from Neighborhoods
CC	GO:0043229	intracellular organelle	IEP	Spinacia oleracea GO terms from Neighborhoods
CC	GO:0043231	intracellular membrane-bounded organelle	IEP	Spinacia oleracea GO terms from Neighborhoods
CC	GO:0043233	organelle lumen	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0044085	cellular component biogenesis	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0046037	GMP metabolic process	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0070006	metalloaminopeptidase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
CC	GO:0070013	intracellular organelle lumen	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0071840	cellular component organization or biogenesis	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0097159	organic cyclic compound binding	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0097367	carbohydrate derivative binding	IEP	Spinacia oleracea GO terms from Neighborhoods
CC	GO:0110165	cellular anatomical entity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:1901265	nucleoside phosphate binding	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:1901363	heterocyclic compound binding	IEP	Spinacia oleracea GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR001680	WD40_rpt	471	502
IPR001680	WD40_rpt	93	130
IPR001680	WD40_rpt	412	450
IPR001680	WD40_rpt	508	543
IPR001680	WD40_rpt	58	88
IPR001680	WD40_rpt	367	407
IPR001680	WD40_rpt	590	627
IPR001680	WD40_rpt	136	174
IPR001680	WD40_rpt	547	584
IPR013934	Utp13_C	649	778

External Links

No external refs found!

Spov3_chr2.02972 (TOZ)

Expression Profile

Co-expression Networks

Functional Annotation