Spov3_chr2.02586 (ftsh7)

Aliases : ftsh7

Description : component *(FtsH7/9) of FtsH plastidial protease complexes

Gene families : OG0064042 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Spinacia oleracea (Sol) PCC: Spov3_chr2.02586
Cluster	Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm): Cluster_161

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004175	endopeptidase activity	None	Extended
MF	GO:0004176	ATP-dependent peptidase activity	IEA	Interproscan
MF	GO:0004222	metalloendopeptidase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006508	proteolysis	IEA	Interproscan
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008233	peptidase activity	None	Extended
MF	GO:0008237	metallopeptidase activity	None	Extended
MF	GO:0008270	zinc ion binding	IEA	Interproscan
CC	GO:0016020	membrane	IEA	Interproscan
MF	GO:0016462	pyrophosphatase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	None	Extended
MF	GO:0016887	ATP hydrolysis activity	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0017111	ribonucleoside triphosphate phosphatase activity	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
MF	GO:0140657	ATP-dependent activity	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0002097	tRNA wobble base modification	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0002100	tRNA wobble adenosine to inosine editing	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0003690	double-stranded DNA binding	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0004000	adenosine deaminase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0004325	ferrochelatase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0006281	DNA repair	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0006298	mismatch repair	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0006382	adenosine to inosine editing	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0006399	tRNA metabolic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0006400	tRNA modification	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0006778	porphyrin-containing compound metabolic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0006779	porphyrin-containing compound biosynthetic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0006783	heme biosynthetic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0006974	DNA damage response	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0008033	tRNA processing	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0008251	tRNA-specific adenosine deaminase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0009451	RNA modification	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0016553	base conversion or substitution editing	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0016810	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0016814	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0019239	deaminase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0030983	mismatched DNA binding	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0033013	tetrapyrrole metabolic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0033014	tetrapyrrole biosynthetic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0033554	cellular response to stress	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0034470	ncRNA processing	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0034641	cellular nitrogen compound metabolic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0042168	heme metabolic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0042440	pigment metabolic process	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0043531	ADP binding	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0046148	pigment biosynthetic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0046483	heterocycle metabolic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0051716	cellular response to stimulus	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:1901360	organic cyclic compound metabolic process	IEP	Spinacia oleracea GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR041569	AAA_lid_3	544	573
IPR003959	ATPase_AAA_core	386	519
IPR000642	Peptidase_M41	607	797
IPR011546	Pept_M41_FtsH_extracell	162	263

External Links

No external refs found!

Spov3_chr2.02586 (ftsh7)

Expression Profile

Co-expression Networks

Functional Annotation