Spov3_chr1.04743 (CLPS3)

Aliases : CLPS3

Description : component *(Clp1) of Cleavage Factor II (CF-IIm) complex

Gene families : OG0069124 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Spinacia oleracea (Sol) PCC: Spov3_chr1.04743
Cluster	Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm): Cluster_2

Type	GO Term	Name	Evidence	Source
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006397	mRNA processing	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016071	mRNA metabolic process	None	Extended
BP	GO:0031123	RNA 3'-end processing	None	Extended
BP	GO:0031124	mRNA 3'-end processing	IEA	Interproscan
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0003712	transcription coregulator activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0003714	transcription corepressor activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0003723	RNA binding	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0005085	guanyl-nucleotide exchange factor activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0008641	ubiquitin-like modifier activating enzyme activity	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0009966	regulation of signal transduction	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0010646	regulation of cell communication	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0016877	ligase activity, forming carbon-sulfur bonds	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0019781	NEDD8 activating enzyme activity	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0023051	regulation of signaling	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0030695	GTPase regulator activity	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0032012	regulation of ARF protein signal transduction	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0032446	protein modification by small protein conjugation	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0045116	protein neddylation	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0046578	regulation of Ras protein signal transduction	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0048583	regulation of response to stimulus	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0051056	regulation of small GTPase mediated signal transduction	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0060589	nucleoside-triphosphatase regulator activity	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0070647	protein modification by small protein conjugation or removal	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0140657	ATP-dependent activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0140658	ATP-dependent chromatin remodeler activity	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:1902531	regulation of intracellular signal transduction	IEP	Spinacia oleracea GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR032319	CLP1_P	13	201
IPR010655	Clp1_C	206	317

External Links

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Spov3_chr1.04743 (CLPS3)

Expression Profile

Co-expression Networks

Functional Annotation