Spov3_chr1.04113 (AAA1, FTR, KTN1,...)

Aliases : AAA1, FTR, KTN1, ERH3, ATKTN1, KATANIN, FRA2, LUE1, BOT1, FRC4, FRC2

Description : catalytic component of Katanin ATP-dependent microtubule severing complex. EC_3.6 hydrolase acting on acid anhydride

Gene families : OG0009492 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Spinacia oleracea (Sol) PCC: Spov3_chr1.04113
Cluster	Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm): Cluster_30

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0016462	pyrophosphatase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	None	Extended
MF	GO:0016887	ATP hydrolysis activity	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0017111	ribonucleoside triphosphate phosphatase activity	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
CC	GO:0000145	exocyst	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0000155	phosphorelay sensor kinase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0001181	RNA polymerase I general transcription initiation factor activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0003677	DNA binding	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0003968	RNA-dependent RNA polymerase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0004177	aminopeptidase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0004525	ribonuclease III activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0004673	protein histidine kinase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0004842	ubiquitin-protein transferase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0005096	GTPase activator activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0005515	protein binding	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0005546	phosphatidylinositol-4,5-bisphosphate binding	IEP	Spinacia oleracea GO terms from Neighborhoods
CC	GO:0005575	cellular_component	IEP	Spinacia oleracea GO terms from Neighborhoods
CC	GO:0005634	nucleus	IEP	Spinacia oleracea GO terms from Neighborhoods
CC	GO:0005694	chromosome	IEP	Spinacia oleracea GO terms from Neighborhoods
CC	GO:0005737	cytoplasm	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0006355	regulation of DNA-templated transcription	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0006361	transcription initiation at RNA polymerase I promoter	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0006629	lipid metabolic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0006887	exocytosis	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0006888	endoplasmic reticulum to Golgi vesicle-mediated transport	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0006914	autophagy	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0007275	multicellular organism development	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0008047	enzyme activator activity	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0008150	biological_process	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0008235	metalloexopeptidase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0009056	catabolic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0009719	response to endogenous stimulus	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0009725	response to hormone	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0009889	regulation of biosynthetic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0010033	response to organic substance	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0010468	regulation of gene expression	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0010556	regulation of macromolecule biosynthetic process	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0015276	ligand-gated monoatomic ion channel activity	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0016042	lipid catabolic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0016192	vesicle-mediated transport	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0016567	protein ubiquitination	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0016746	acyltransferase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0016755	aminoacyltransferase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0016775	phosphotransferase activity, nitrogenous group as acceptor	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0019222	regulation of metabolic process	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0019787	ubiquitin-like protein transferase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0022834	ligand-gated channel activity	IEP	Spinacia oleracea GO terms from Neighborhoods
CC	GO:0030127	COPII vesicle coat	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0031323	regulation of cellular metabolic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0031326	regulation of cellular biosynthetic process	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0032296	double-stranded RNA-specific ribonuclease activity	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0032446	protein modification by small protein conjugation	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0032501	multicellular organismal process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0032940	secretion by cell	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0042221	response to chemical	IEP	Spinacia oleracea GO terms from Neighborhoods
CC	GO:0043227	membrane-bounded organelle	IEP	Spinacia oleracea GO terms from Neighborhoods
CC	GO:0043231	intracellular membrane-bounded organelle	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0043687	post-translational protein modification	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0046903	secretion	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0050789	regulation of biological process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0050794	regulation of cellular process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0051171	regulation of nitrogen compound metabolic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0051252	regulation of RNA metabolic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0060255	regulation of macromolecule metabolic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0061919	process utilizing autophagic mechanism	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0065007	biological regulation	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0070006	metalloaminopeptidase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0070647	protein modification by small protein conjugation or removal	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0080090	regulation of primary metabolic process	IEP	Spinacia oleracea GO terms from Neighborhoods
CC	GO:0110165	cellular anatomical entity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0140223	general transcription initiation factor activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0140299	small molecule sensor activity	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0140352	export from cell	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:1901575	organic substance catabolic process	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:1901981	phosphatidylinositol phosphate binding	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:1902936	phosphatidylinositol bisphosphate binding	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:2001141	regulation of RNA biosynthetic process	IEP	Spinacia oleracea GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR003959	ATPase_AAA_core	270	405
IPR015415	Spast_Vps4_C	469	514
IPR041569	AAA_lid_3	427	468

External Links

No external refs found!

Spov3_chr1.04113 (AAA1, FTR, KTN1,...)

Expression Profile

Co-expression Networks

Functional Annotation