Spov3_chr1.03844

Description : Nonsense-Mediated mRNA Decay kinase *(SMG1)

Gene families : OG0069897 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Spinacia oleracea (Sol) PCC: Spov3_chr1.03844
Cluster	Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm): Cluster_110

Type	GO Term	Name	Evidence	Source
BP	GO:0000184	nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	IEA	Interproscan
BP	GO:0000956	nuclear-transcribed mRNA catabolic process	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004672	protein kinase activity	None	Extended
MF	GO:0004674	protein serine/threonine kinase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006401	RNA catabolic process	None	Extended
BP	GO:0006402	mRNA catabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006793	phosphorus metabolic process	None	Extended
BP	GO:0006796	phosphate-containing compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009056	catabolic process	None	Extended
BP	GO:0009057	macromolecule catabolic process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0009890	negative regulation of biosynthetic process	None	Extended
BP	GO:0009892	negative regulation of metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010558	negative regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010605	negative regulation of macromolecule metabolic process	None	Extended
BP	GO:0010629	negative regulation of gene expression	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016071	mRNA metabolic process	None	Extended
MF	GO:0016301	kinase activity	None	Extended
BP	GO:0016310	phosphorylation	IEA	Interproscan
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	None	Extended
MF	GO:0016773	phosphotransferase activity, alcohol group as acceptor	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0019439	aromatic compound catabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031324	negative regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0031327	negative regulation of cellular biosynthetic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034655	nucleobase-containing compound catabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044248	cellular catabolic process	None	Extended
BP	GO:0044270	cellular nitrogen compound catabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0046700	heterocycle catabolic process	None	Extended
BP	GO:0048519	negative regulation of biological process	None	Extended
BP	GO:0048523	negative regulation of cellular process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901361	organic cyclic compound catabolic process	None	Extended
BP	GO:1901575	organic substance catabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000148	1,3-beta-D-glucan synthase complex	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0000155	phosphorelay sensor kinase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0000166	nucleotide binding	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0000271	polysaccharide biosynthetic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0000375	RNA splicing, via transesterification reactions	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0000377	RNA splicing, via transesterification reactions with bulged adenosine as nucleophile	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0000398	mRNA splicing, via spliceosome	IEP	Spinacia oleracea GO terms from Neighborhoods
CC	GO:0000786	nucleosome	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0003676	nucleic acid binding	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0003677	DNA binding	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0003712	transcription coregulator activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0003843	1,3-beta-D-glucan synthase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0003909	DNA ligase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0003910	DNA ligase (ATP) activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0003989	acetyl-CoA carboxylase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0004673	protein histidine kinase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0004843	cysteine-type deubiquitinase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0005524	ATP binding	IEP	Spinacia oleracea GO terms from Neighborhoods
CC	GO:0005643	nuclear pore	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0005976	polysaccharide metabolic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0006074	(1->3)-beta-D-glucan metabolic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0006075	(1->3)-beta-D-glucan biosynthetic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0006310	DNA recombination	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0006325	chromatin organization	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0006334	nucleosome assembly	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0006338	chromatin remodeling	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0006351	DNA-templated transcription	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0006357	regulation of transcription by RNA polymerase II	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0006890	retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0006913	nucleocytoplasmic transport	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0008094	ATP-dependent activity, acting on DNA	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0008233	peptidase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0008237	metallopeptidase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0009058	biosynthetic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0009059	macromolecule biosynthetic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0009250	glucan biosynthetic process	IEP	Spinacia oleracea GO terms from Neighborhoods
CC	GO:0009317	acetyl-CoA carboxylase complex	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0016051	carbohydrate biosynthetic process	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0016307	obsolete phosphatidylinositol phosphate kinase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0016421	CoA carboxylase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0016579	protein deubiquitination	IEP	Spinacia oleracea GO terms from Neighborhoods
CC	GO:0016592	mediator complex	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0016743	carboxyl- or carbamoyltransferase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0016758	hexosyltransferase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0016775	phosphotransferase activity, nitrogenous group as acceptor	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0016779	nucleotidyltransferase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0016874	ligase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0016885	ligase activity, forming carbon-carbon bonds	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0016886	ligase activity, forming phosphoric ester bonds	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0017038	protein import	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0017056	structural constituent of nuclear pore	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0017069	snRNA binding	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0017070	U6 snRNA binding	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0017076	purine nucleotide binding	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0018130	heterocycle biosynthetic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0019438	aromatic compound biosynthetic process	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0019783	ubiquitin-like protein peptidase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0030554	adenyl nucleotide binding	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0030623	U5 snRNA binding	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0032553	ribonucleotide binding	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0032555	purine ribonucleotide binding	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0032559	adenyl ribonucleotide binding	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0032774	RNA biosynthetic process	IEP	Spinacia oleracea GO terms from Neighborhoods
CC	GO:0032991	protein-containing complex	IEP	Spinacia oleracea GO terms from Neighborhoods
CC	GO:0032993	protein-DNA complex	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0034062	5'-3' RNA polymerase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0034654	nucleobase-containing compound biosynthetic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0034728	nucleosome organization	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0035251	UDP-glucosyltransferase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0036094	small molecule binding	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0043167	ion binding	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0043168	anion binding	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0043687	post-translational protein modification	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0043933	protein-containing complex organization	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0044042	glucan metabolic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0044249	cellular biosynthetic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0044255	cellular lipid metabolic process	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0046527	glucosyltransferase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0051169	nuclear transport	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0051273	beta-glucan metabolic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0051274	beta-glucan biosynthetic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0070646	protein modification by small protein removal	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0070647	protein modification by small protein conjugation or removal	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0071824	protein-DNA complex organization	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0097159	organic cyclic compound binding	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0097367	carbohydrate derivative binding	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0097747	RNA polymerase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
CC	GO:0098797	plasma membrane protein complex	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0101005	deubiquitinase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0140097	catalytic activity, acting on DNA	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0140299	small molecule sensor activity	IEP	Spinacia oleracea GO terms from Neighborhoods
CC	GO:0140513	nuclear protein-containing complex	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0140640	catalytic activity, acting on a nucleic acid	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0140657	ATP-dependent activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0140658	ATP-dependent chromatin remodeler activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:1901265	nucleoside phosphate binding	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:1901362	organic cyclic compound biosynthetic process	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:1901363	heterocyclic compound binding	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:1901576	organic substance biosynthetic process	IEP	Spinacia oleracea GO terms from Neighborhoods
CC	GO:1902494	catalytic complex	IEP	Spinacia oleracea GO terms from Neighborhoods
CC	GO:1990234	transferase complex	IEP	Spinacia oleracea GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR031559	SMG1	672	1188
IPR003152	FATC_dom	3745	3774
IPR000403	PI3/4_kinase_cat_dom	2026	2302

External Links

No external refs found!

Spov3_chr1.03844

Expression Profile

Co-expression Networks

Functional Annotation