Bra008963

Description : regulatory protein *(BDR) involved in RNA polymerase-II transcription

Gene families : OG0004320 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0004320_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Brassica rapa (Bra) PCC: Bra008963
Cluster	Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm): Cluster_226

Target	Alias	Description	ECC score	Gene Family Method	Actions
Bra023324	No alias	not classified	0.02	OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol

Type	GO Term	Name	Evidence	Source
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006351	DNA-templated transcription	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0032774	RNA biosynthetic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034654	nucleobase-containing compound biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000375	RNA splicing, via transesterification reactions	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0000377	RNA splicing, via transesterification reactions with bulged adenosine as nucleophile	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0000398	mRNA splicing, via spliceosome	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0004144	diacylglycerol O-acyltransferase activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0005515	protein binding	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0005984	disaccharide metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0005991	trehalose metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0005992	trehalose biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006397	mRNA processing	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0008374	O-acyltransferase activity	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0008380	RNA splicing	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0009311	oligosaccharide metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0009312	oligosaccharide biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0016051	carbohydrate biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0016071	mRNA metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0016411	acylglycerol O-acyltransferase activity	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0045017	glycerolipid biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0046351	disaccharide biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0046486	glycerolipid metabolic process	IEP	Brassica rapa GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR012921	SPOC_C	1004	1147
IPR006946	DGR2-like_dom	194	359
IPR006946	DGR2-like_dom	26	182
IPR003618	TFIIS_cen_dom	717	803

External Links

No external refs found!

Bra008963

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation