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  5. Spov3_chr1.02388

Spov3_chr1.02388 (AtSAP60, EMB2776,...)


Aliases : AtSAP60, EMB2776, PRP4, LIS, AtPRP4

Description : component *(PRPF4) of spliceosomal U4/U6 snRNP


Gene families : OG0000244 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0000244_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Spinacia oleracea (Sol) PCC: Spov3_chr1.02388
Cluster Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm): Cluster_17

Target Alias Description ECC score Gene Family Method Actions
Spov3_C0017.00046 AtSAP60,... not classified 0.03 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr1.02612 AtSAP60,... component *(PRPF4) of spliceosomal U4/U6 snRNP 0.08 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr1.03376 AtSAP60,... component *(PRPF4) of spliceosomal U4/U6 snRNP 0.05 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr5.03472 No alias not classified 0.09 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004066 asparagine synthase (glutamine-hydrolyzing) activity IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0004499 N,N-dimethylaniline monooxygenase activity IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0006528 asparagine metabolic process IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0006529 asparagine biosynthetic process IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0008652 amino acid biosynthetic process IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0009066 aspartate family amino acid metabolic process IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0009067 aspartate family amino acid biosynthetic process IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0016709 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0050661 NADP binding IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:1901605 alpha-amino acid metabolic process IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:1901607 alpha-amino acid biosynthetic process IEP Spinacia oleracea GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR001680 WD40_rpt 48 70
IPR001680 WD40_rpt 74 111
IPR001680 WD40_rpt 122 153
IPR001680 WD40_rpt 161 195
No external refs found!