Spov3_chr1.02301

Description : chromatin remodeling factor *(Rad5-like)

Gene families : OG0069136 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Spinacia oleracea (Sol) PCC: Spov3_chr1.02301
Cluster	Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm): Cluster_162

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0008094	ATP-dependent activity, acting on DNA	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
MF	GO:0046872	metal ion binding	IEA	Interproscan
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:0140097	catalytic activity, acting on DNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
MF	GO:0140657	ATP-dependent activity	None	Extended
MF	GO:0140658	ATP-dependent chromatin remodeler activity	IEA	Interproscan
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000075	cell cycle checkpoint signaling	IEP	Spinacia oleracea GO terms from Neighborhoods
CC	GO:0000148	1,3-beta-D-glucan synthase complex	IEP	Spinacia oleracea GO terms from Neighborhoods
CC	GO:0000176	nuclear exosome (RNase complex)	IEP	Spinacia oleracea GO terms from Neighborhoods
CC	GO:0000178	exosome (RNase complex)	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0000271	polysaccharide biosynthetic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0000413	protein peptidyl-prolyl isomerization	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0003676	nucleic acid binding	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0003682	chromatin binding	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0003723	RNA binding	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0003729	mRNA binding	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0003843	1,3-beta-D-glucan synthase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0004527	exonuclease activity	IEP	Spinacia oleracea GO terms from Neighborhoods
CC	GO:0005685	U1 snRNP	IEP	Spinacia oleracea GO terms from Neighborhoods
CC	GO:0005694	chromosome	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0006074	(1->3)-beta-D-glucan metabolic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0006075	(1->3)-beta-D-glucan biosynthetic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0006325	chromatin organization	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0006338	chromatin remodeling	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0006376	mRNA splice site recognition	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0006396	RNA processing	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0007088	regulation of mitotic nuclear division	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0007093	mitotic cell cycle checkpoint signaling	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0007094	mitotic spindle assembly checkpoint signaling	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0007346	regulation of mitotic cell cycle	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0008408	3'-5' exonuclease activity	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0009250	glucan biosynthetic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0010564	regulation of cell cycle process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0010639	negative regulation of organelle organization	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0010948	negative regulation of cell cycle process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0010965	regulation of mitotic sister chromatid separation	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0016043	cellular component organization	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0016579	protein deubiquitination	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0018208	peptidyl-proline modification	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0022402	cell cycle process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0022618	protein-RNA complex assembly	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0030071	regulation of mitotic metaphase/anaphase transition	IEP	Spinacia oleracea GO terms from Neighborhoods
CC	GO:0030532	small nuclear ribonucleoprotein complex	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0031047	regulatory ncRNA-mediated gene silencing	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0031491	nucleosome binding	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0031577	spindle checkpoint signaling	IEP	Spinacia oleracea GO terms from Neighborhoods
CC	GO:0032991	protein-containing complex	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0033043	regulation of organelle organization	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0033044	regulation of chromosome organization	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0033045	regulation of sister chromatid segregation	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0033046	negative regulation of sister chromatid segregation	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0033047	regulation of mitotic sister chromatid segregation	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0033048	negative regulation of mitotic sister chromatid segregation	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0035251	UDP-glucosyltransferase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0043933	protein-containing complex organization	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0044042	glucan metabolic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0045786	negative regulation of cell cycle	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0045839	negative regulation of mitotic nuclear division	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0045841	negative regulation of mitotic metaphase/anaphase transition	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0045930	negative regulation of mitotic cell cycle	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0048519	negative regulation of biological process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0048523	negative regulation of cellular process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0051128	regulation of cellular component organization	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0051129	negative regulation of cellular component organization	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0051273	beta-glucan metabolic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0051274	beta-glucan biosynthetic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0051726	regulation of cell cycle	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0051783	regulation of nuclear division	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0051784	negative regulation of nuclear division	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0051983	regulation of chromosome segregation	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0051985	negative regulation of chromosome segregation	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0070646	protein modification by small protein removal	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0071173	spindle assembly checkpoint signaling	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0071174	mitotic spindle checkpoint signaling	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0071824	protein-DNA complex organization	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0071826	protein-RNA complex organization	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0071840	cellular component organization or biogenesis	IEP	Spinacia oleracea GO terms from Neighborhoods
CC	GO:0097525	spliceosomal snRNP complex	IEP	Spinacia oleracea GO terms from Neighborhoods
CC	GO:0098797	plasma membrane protein complex	IEP	Spinacia oleracea GO terms from Neighborhoods
CC	GO:0120114	Sm-like protein family complex	IEP	Spinacia oleracea GO terms from Neighborhoods
CC	GO:0140513	nuclear protein-containing complex	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:1901987	regulation of cell cycle phase transition	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:1901988	negative regulation of cell cycle phase transition	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:1901990	regulation of mitotic cell cycle phase transition	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:1901991	negative regulation of mitotic cell cycle phase transition	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:1902099	regulation of metaphase/anaphase transition of cell cycle	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:1902100	negative regulation of metaphase/anaphase transition of cell cycle	IEP	Spinacia oleracea GO terms from Neighborhoods
CC	GO:1902494	catalytic complex	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:1903047	mitotic cell cycle process	IEP	Spinacia oleracea GO terms from Neighborhoods
CC	GO:1905354	exoribonuclease complex	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:1905818	regulation of chromosome separation	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:1905819	negative regulation of chromosome separation	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:2000816	negative regulation of mitotic sister chromatid separation	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:2001251	negative regulation of chromosome organization	IEP	Spinacia oleracea GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR001650	Helicase_C	668	781
IPR000330	SNF2_N	173	560
IPR018957	Znf_C3HC4_RING-type	583	622

External Links

No external refs found!

Spov3_chr1.02301

Expression Profile

Co-expression Networks

Functional Annotation