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  5. Bra008402

Bra008402


Description : alpha-type-2 component *(PAB) of 26S proteasome. EC_3.4 hydrolase acting on peptide bond (peptidase)


Gene families : OG0004276 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0004276_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa (Bra) PCC: Bra008402
Cluster Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm): Cluster_128


Type GO Term Name Evidence Source
CC GO:0005839 proteasome core complex IEA Interproscan
BP GO:0006511 ubiquitin-dependent protein catabolic process IEA Interproscan
CC GO:0019773 proteasome core complex, alpha-subunit complex IEA Interproscan
BP GO:0051603 proteolysis involved in protein catabolic process IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEP Brassica rapa GO terms from Neighborhoods
MF GO:0003676 nucleic acid binding IEP Brassica rapa GO terms from Neighborhoods
MF GO:0003677 DNA binding IEP Brassica rapa GO terms from Neighborhoods
MF GO:0003779 actin binding IEP Brassica rapa GO terms from Neighborhoods
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Brassica rapa GO terms from Neighborhoods
MF GO:0004252 serine-type endopeptidase activity IEP Brassica rapa GO terms from Neighborhoods
MF GO:0004559 alpha-mannosidase activity IEP Brassica rapa GO terms from Neighborhoods
MF GO:0004571 mannosyl-oligosaccharide 1,2-alpha-mannosidase activity IEP Brassica rapa GO terms from Neighborhoods
MF GO:0005509 calcium ion binding IEP Brassica rapa GO terms from Neighborhoods
BP GO:0006325 chromatin organization IEP Brassica rapa GO terms from Neighborhoods
BP GO:0006334 nucleosome assembly IEP Brassica rapa GO terms from Neighborhoods
BP GO:0006338 chromatin remodeling IEP Brassica rapa GO terms from Neighborhoods
BP GO:0006465 signal peptide processing IEP Brassica rapa GO terms from Neighborhoods
BP GO:0006694 steroid biosynthetic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0008202 steroid metabolic process IEP Brassica rapa GO terms from Neighborhoods
MF GO:0015923 mannosidase activity IEP Brassica rapa GO terms from Neighborhoods
MF GO:0015924 mannosyl-oligosaccharide mannosidase activity IEP Brassica rapa GO terms from Neighborhoods
BP GO:0016125 sterol metabolic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0016126 sterol biosynthetic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0016485 protein processing IEP Brassica rapa GO terms from Neighborhoods
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP Brassica rapa GO terms from Neighborhoods
MF GO:0016628 oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor IEP Brassica rapa GO terms from Neighborhoods
CC GO:0032993 protein-DNA complex IEP Brassica rapa GO terms from Neighborhoods
MF GO:0034062 5'-3' RNA polymerase activity IEP Brassica rapa GO terms from Neighborhoods
BP GO:0034728 nucleosome organization IEP Brassica rapa GO terms from Neighborhoods
BP GO:0051604 protein maturation IEP Brassica rapa GO terms from Neighborhoods
BP GO:0065004 protein-DNA complex assembly IEP Brassica rapa GO terms from Neighborhoods
BP GO:0071824 protein-DNA complex organization IEP Brassica rapa GO terms from Neighborhoods
MF GO:0097747 RNA polymerase activity IEP Brassica rapa GO terms from Neighborhoods
BP GO:1901362 organic cyclic compound biosynthetic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:1901615 organic hydroxy compound metabolic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:1901617 organic hydroxy compound biosynthetic process IEP Brassica rapa GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR000426 Proteasome_asu_N 6 28
IPR001353 Proteasome_sua/b 31 213
No external refs found!