Spov3_C0013.00033 (PDE328, SVR1)

Aliases : PDE328, SVR1

Description : plastidial rRNA pseudouridine synthase *(SVR1)

Gene families : OG0066138 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Spinacia oleracea (Sol) PCC: Spov3_C0013.00033
Cluster	Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm): Cluster_15

Type	GO Term	Name	Evidence	Source
BP	GO:0001522	pseudouridine synthesis	IEA	Interproscan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009451	RNA modification	IEA	Interproscan
MF	GO:0009982	pseudouridine synthase activity	IEA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016853	isomerase activity	None	Extended
MF	GO:0016866	intramolecular transferase activity	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0000774	adenyl-nucleotide exchange factor activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0003690	double-stranded DNA binding	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0003746	translation elongation factor activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0003916	DNA topoisomerase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0003918	DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0004018	N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0004366	glycerol-3-phosphate O-acyltransferase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0005524	ATP binding	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0005525	GTP binding	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0006188	IMP biosynthetic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0006265	DNA topological change	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0006353	DNA-templated transcription termination	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0006414	translational elongation	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0006457	protein folding	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0006605	protein targeting	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0006612	protein targeting to membrane	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0006613	cotranslational protein targeting to membrane	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0006614	SRP-dependent cotranslational protein targeting to membrane	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0008312	7S RNA binding	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0008483	transaminase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0009058	biosynthetic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0009059	macromolecule biosynthetic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0009123	nucleoside monophosphate metabolic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0009124	nucleoside monophosphate biosynthetic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0009126	purine nucleoside monophosphate metabolic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0009127	purine nucleoside monophosphate biosynthetic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0009156	ribonucleoside monophosphate biosynthetic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0009161	ribonucleoside monophosphate metabolic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0009167	purine ribonucleoside monophosphate metabolic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0009168	purine ribonucleoside monophosphate biosynthetic process	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0016769	transferase activity, transferring nitrogenous groups	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0016840	carbon-nitrogen lyase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0016842	amidine-lyase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0016874	ligase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0016881	acid-amino acid ligase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0017076	purine nucleotide binding	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0018130	heterocycle biosynthetic process	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0019001	guanyl nucleotide binding	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0019438	aromatic compound biosynthetic process	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0019842	vitamin binding	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0030554	adenyl nucleotide binding	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0030976	thiamine pyrophosphate binding	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0031072	heat shock protein binding	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0032553	ribonucleotide binding	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0032555	purine ribonucleotide binding	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0032559	adenyl ribonucleotide binding	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0032561	guanyl ribonucleotide binding	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0032774	RNA biosynthetic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0033365	protein localization to organelle	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0034654	nucleobase-containing compound biosynthetic process	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0036094	small molecule binding	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0042802	identical protein binding	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0042803	protein homodimerization activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0043167	ion binding	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0043168	anion binding	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0044183	protein folding chaperone	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0044249	cellular biosynthetic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0044271	cellular nitrogen compound biosynthetic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0045047	protein targeting to ER	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0046040	IMP metabolic process	IEP	Spinacia oleracea GO terms from Neighborhoods
CC	GO:0048500	signal recognition particle	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0050997	quaternary ammonium group binding	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0051082	unfolded protein binding	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0051087	protein-folding chaperone binding	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0051668	localization within membrane	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0060590	ATPase regulator activity	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0070972	protein localization to endoplasmic reticulum	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0072594	establishment of protein localization to organelle	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0072599	establishment of protein localization to endoplasmic reticulum	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0072657	protein localization to membrane	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0090150	establishment of protein localization to membrane	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0097367	carbohydrate derivative binding	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0140657	ATP-dependent activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0140662	ATP-dependent protein folding chaperone	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:1901265	nucleoside phosphate binding	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:1901362	organic cyclic compound biosynthetic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:1901576	organic substance biosynthetic process	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:1901681	sulfur compound binding	IEP	Spinacia oleracea GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR002942	S4_RNA-bd	122	165
IPR006145	PsdUridine_synth_RsuA/RluA	185	327

External Links

No external refs found!

Spov3_C0013.00033 (PDE328, SVR1)

Expression Profile

Co-expression Networks

Functional Annotation