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  5. Spov3_C0011.00023

Spov3_C0011.00023 (LHCB3, LHCB3*1)


Aliases : LHCB3, LHCB3*1

Description : component *(LHCb1/2/3) of LHC-II complex


Gene families : OG0001672 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0001672_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Spinacia oleracea (Sol) PCC: Spov3_C0011.00023
Cluster Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm): Cluster_102

Target Alias Description ECC score Gene Family Method Actions
Lsat_1_v5_gn_1_95341.1 CAB3, LHCB1.2, AB180 component *(LHCb1/2/3) of LHC-II complex 0.02 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Lsat_1_v5_gn_2_102941.1 CAB3, LHCB1.2, AB180 component *(LHCb1/2/3) of LHC-II complex 0.02 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Lsat_1_v5_gn_5_144940.1 CAB3, LHCB1.2, AB180 component *(LHCb1/2/3) of LHC-II complex 0.02 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Lsat_1_v5_gn_5_144981.1 CAB3, LHCB1.2, AB180 component *(LHCb1/2/3) of LHC-II complex 0.01 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Lsat_1_v5_gn_7_34481.1 CAB3, LHCB1.2, AB180 component *(LHCb1/2/3) of LHC-II complex 0.02 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004045 aminoacyl-tRNA hydrolase activity IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0004525 ribonuclease III activity IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0004655 porphobilinogen synthase activity IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0004853 uroporphyrinogen decarboxylase activity IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0005261 monoatomic cation channel activity IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0005509 calcium ion binding IEP Spinacia oleracea GO terms from Neighborhoods
CC GO:0005575 cellular_component IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0006725 cellular aromatic compound metabolic process IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0006778 porphyrin-containing compound metabolic process IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0006779 porphyrin-containing compound biosynthetic process IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0008150 biological_process IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0008152 metabolic process IEP Spinacia oleracea GO terms from Neighborhoods
CC GO:0009507 chloroplast IEP Spinacia oleracea GO terms from Neighborhoods
CC GO:0009521 photosystem IEP Spinacia oleracea GO terms from Neighborhoods
CC GO:0009522 photosystem I IEP Spinacia oleracea GO terms from Neighborhoods
CC GO:0009523 photosystem II IEP Spinacia oleracea GO terms from Neighborhoods
CC GO:0009536 plastid IEP Spinacia oleracea GO terms from Neighborhoods
CC GO:0009538 photosystem I reaction center IEP Spinacia oleracea GO terms from Neighborhoods
CC GO:0009654 photosystem II oxygen evolving complex IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0009987 cellular process IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0010109 regulation of photosynthesis IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0010206 photosystem II repair IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0010207 photosystem II assembly IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0010242 oxygen evolving activity IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0015252 proton channel activity IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0015979 photosynthesis IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0015994 chlorophyll metabolic process IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0015995 chlorophyll biosynthetic process IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0016829 lyase activity IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0016831 carboxy-lyase activity IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0016851 magnesium chelatase activity IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0016866 intramolecular transferase activity IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0016868 intramolecular transferase activity, phosphotransferases IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0016874 ligase activity IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0018130 heterocycle biosynthetic process IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0019438 aromatic compound biosynthetic process IEP Spinacia oleracea GO terms from Neighborhoods
CC GO:0019898 extrinsic component of membrane IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0022607 cellular component assembly IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0030091 protein repair IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0032296 double-stranded RNA-specific ribonuclease activity IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0032977 membrane insertase activity IEP Spinacia oleracea GO terms from Neighborhoods
CC GO:0032991 protein-containing complex IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0033013 tetrapyrrole metabolic process IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0033014 tetrapyrrole biosynthetic process IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0042440 pigment metabolic process IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0042548 regulation of photosynthesis, light reaction IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0042549 photosystem II stabilization IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0043467 regulation of generation of precursor metabolites and energy IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0043933 protein-containing complex organization IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0044237 cellular metabolic process IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0046148 pigment biosynthetic process IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0046406 magnesium protoporphyrin IX methyltransferase activity IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0046483 heterocycle metabolic process IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0046933 proton-transporting ATP synthase activity, rotational mechanism IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0051002 ligase activity, forming nitrogen-metal bonds IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0051003 ligase activity, forming nitrogen-metal bonds, forming coordination complexes IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0065003 protein-containing complex assembly IEP Spinacia oleracea GO terms from Neighborhoods
CC GO:0098796 membrane protein complex IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0140101 catalytic activity, acting on a tRNA IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0140104 molecular carrier activity IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0140597 protein carrier chaperone IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:1901360 organic cyclic compound metabolic process IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:1901362 organic cyclic compound biosynthetic process IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:1901566 organonitrogen compound biosynthetic process IEP Spinacia oleracea GO terms from Neighborhoods
CC GO:1902494 catalytic complex IEP Spinacia oleracea GO terms from Neighborhoods
CC GO:1990204 oxidoreductase complex IEP Spinacia oleracea GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR022796 Chloroa_b-bind 63 230
No external refs found!