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  5. Bra008158

Bra008158


Description : not classified


Gene families : OG0004324 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0004324_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa (Bra) PCC: Bra008158
Cluster Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm): Cluster_99

Target Alias Description ECC score Gene Family Method Actions
Lsat_1_v5_gn_5_150361.1 REME2 not classified 0.01 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000151 ubiquitin ligase complex IEP Brassica rapa GO terms from Neighborhoods
CC GO:0000152 nuclear ubiquitin ligase complex IEP Brassica rapa GO terms from Neighborhoods
MF GO:0004748 ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor IEP Brassica rapa GO terms from Neighborhoods
CC GO:0005680 anaphase-promoting complex IEP Brassica rapa GO terms from Neighborhoods
BP GO:0009890 negative regulation of biosynthetic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0009892 negative regulation of metabolic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0010558 negative regulation of macromolecule biosynthetic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0010605 negative regulation of macromolecule metabolic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0010629 negative regulation of gene expression IEP Brassica rapa GO terms from Neighborhoods
MF GO:0016725 oxidoreductase activity, acting on CH or CH2 groups IEP Brassica rapa GO terms from Neighborhoods
MF GO:0016728 oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor IEP Brassica rapa GO terms from Neighborhoods
BP GO:0031047 regulatory ncRNA-mediated gene silencing IEP Brassica rapa GO terms from Neighborhoods
BP GO:0031324 negative regulation of cellular metabolic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0031327 negative regulation of cellular biosynthetic process IEP Brassica rapa GO terms from Neighborhoods
CC GO:0031461 cullin-RING ubiquitin ligase complex IEP Brassica rapa GO terms from Neighborhoods
MF GO:0061731 ribonucleoside-diphosphate reductase activity IEP Brassica rapa GO terms from Neighborhoods
CC GO:0140513 nuclear protein-containing complex IEP Brassica rapa GO terms from Neighborhoods
CC GO:0140535 intracellular protein-containing complex IEP Brassica rapa GO terms from Neighborhoods
CC GO:1990234 transferase complex IEP Brassica rapa GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR032867 DYW_dom 552 644
IPR002885 Pentatricopeptide_rpt 232 279
IPR002885 Pentatricopeptide_rpt 334 382
IPR046848 E_motif 452 514
IPR002885 Pentatricopeptide_rpt 71 100
IPR002885 Pentatricopeptide_rpt 173 199
IPR002885 Pentatricopeptide_rpt 409 433
IPR002885 Pentatricopeptide_rpt 145 171
IPR002885 Pentatricopeptide_rpt 308 333
No external refs found!