Lsat_1_v5_gn_9_94880.1 (EMB2296)


Aliases : EMB2296

Description : component *(uL2) of large ribosomal-subunit (LSU) proteome


Gene families : OG0000375 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0000375_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Lactuca sativa (Lsa) PCC: Lsat_1_v5_gn_9_94880.1
Cluster Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm): Cluster_28

Target Alias Description ECC score Gene Family Method Actions
Bra010550 No alias component *(uL2) of large ribosomal-subunit (LSU) proteome 0.01 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Bra011664 EMB2296 component *(uL2) of large ribosomal-subunit (LSU) proteome 0.1 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Bra017749 EMB2296 component *(uL2) of large ribosomal-subunit (LSU) proteome 0.13 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Bra039911 EMB2296 component *(uL2) of large ribosomal-subunit (LSU) proteome 0.09 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Mp7g01860.1 EMB2296 component *(uL2) of large ribosomal-subunit (LSU) proteome 0.07 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Mp7g08730.1 EMB2296 component *(uL2) of large ribosomal-subunit (LSU) proteome 0.06 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr4.00337 No alias component *(uL2) of large ribosomal-subunit (LSU) proteome 0.09 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr5.00075 No alias component *(uL2) of large ribosomal-subunit (LSU) proteome 0.05 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0008097 5S rRNA binding IEP Lactuca Sativa GO terms from Neighborhoods
CC GO:0015934 large ribosomal subunit IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0019843 rRNA binding IEP Lactuca Sativa GO terms from Neighborhoods
CC GO:0044391 ribosomal subunit IEP Lactuca Sativa GO terms from Neighborhoods
CC GO:1990904 ribonucleoprotein complex IEP Lactuca Sativa GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR022666 Ribosomal_uL2_RNA-bd_dom 13 89
IPR022669 Ribosomal_uL2_C 98 225
No external refs found!