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  5. Lsat_1_v5_gn_9_83400.1

Lsat_1_v5_gn_9_83400.1 (RH36, AtRH36, SWA3)


Aliases : RH36, AtRH36, SWA3

Description : SSU processome assembly factor *(SWA3)


Gene families : OG0035928 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Lactuca sativa (Lsa) PCC: Lsat_1_v5_gn_9_83400.1
Cluster Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm): Cluster_47


Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004843 cysteine-type deubiquitinase activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0005515 protein binding IEP Lactuca Sativa GO terms from Neighborhoods
CC GO:0005730 nucleolus IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0006364 rRNA processing IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0006457 protein folding IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0008134 transcription factor binding IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0016072 rRNA metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0016462 pyrophosphatase activity IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0016579 protein deubiquitination IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0017111 ribonucleoside triphosphate phosphatase activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0019783 ubiquitin-like protein peptidase activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0019899 enzyme binding IEP Lactuca Sativa GO terms from Neighborhoods
CC GO:0030684 preribosome IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0031267 small GTPase binding IEP Lactuca Sativa GO terms from Neighborhoods
CC GO:0032040 small-subunit processome IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0034660 ncRNA metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
CC GO:0043228 non-membrane-bounded organelle IEP Lactuca Sativa GO terms from Neighborhoods
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0051020 GTPase binding IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0051082 unfolded protein binding IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0070646 protein modification by small protein removal IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0101005 deubiquitinase activity IEP Lactuca Sativa GO terms from Neighborhoods
CC GO:1990904 ribonucleoprotein complex IEP Lactuca Sativa GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR011545 DEAD/DEAH_box_helicase_dom 80 248
IPR001650 Helicase_C 298 395
No external refs found!