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  5. Lsat_1_v5_gn_9_63501.1

Lsat_1_v5_gn_9_63501.1


Description : not classified


Gene families : OG0035757 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Lactuca sativa (Lsa) PCC: Lsat_1_v5_gn_9_63501.1
Cluster Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm): Cluster_150


Type GO Term Name Evidence Source
CC GO:0005759 mitochondrial matrix IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000049 tRNA binding IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0000166 nucleotide binding IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0000375 RNA splicing, via transesterification reactions IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0000398 mRNA splicing, via spliceosome IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0001522 pseudouridine synthesis IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0002097 tRNA wobble base modification IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0002098 tRNA wobble uridine modification IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0003674 molecular_function IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0003676 nucleic acid binding IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0003678 DNA helicase activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0003697 single-stranded DNA binding IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0003723 RNA binding IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0003922 GMP synthase (glutamine-hydrolyzing) activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0004177 aminopeptidase activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0005488 binding IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0005524 ATP binding IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0005525 GTP binding IEP Lactuca Sativa GO terms from Neighborhoods
CC GO:0005634 nucleus IEP Lactuca Sativa GO terms from Neighborhoods
CC GO:0005643 nuclear pore IEP Lactuca Sativa GO terms from Neighborhoods
CC GO:0005681 spliceosomal complex IEP Lactuca Sativa GO terms from Neighborhoods
CC GO:0005730 nucleolus IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0006139 nucleobase-containing compound metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0006177 GMP biosynthetic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0006281 DNA repair IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0006302 double-strand break repair IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0006303 double-strand break repair via nonhomologous end joining IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0006364 rRNA processing IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0006396 RNA processing IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0006399 tRNA metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0006400 tRNA modification IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0006725 cellular aromatic compound metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0006807 nitrogen compound metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0006974 DNA damage response IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0008235 metalloexopeptidase activity IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0009123 nucleoside monophosphate metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0009124 nucleoside monophosphate biosynthetic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0009126 purine nucleoside monophosphate metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0009127 purine nucleoside monophosphate biosynthetic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0009156 ribonucleoside monophosphate biosynthetic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0009161 ribonucleoside monophosphate metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0009167 purine ribonucleoside monophosphate metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0009168 purine ribonucleoside monophosphate biosynthetic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0009451 RNA modification IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0009987 cellular process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0016070 RNA metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0016072 rRNA metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0016462 pyrophosphatase activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0016874 ligase activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0016887 ATP hydrolysis activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0017056 structural constituent of nuclear pore IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0017076 purine nucleotide binding IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0017111 ribonucleoside triphosphate phosphatase activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0019001 guanyl nucleotide binding IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0019899 enzyme binding IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0030145 manganese ion binding IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0030515 snoRNA binding IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0030554 adenyl nucleotide binding IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0031072 heat shock protein binding IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0031267 small GTPase binding IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0032553 ribonucleotide binding IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0032555 purine ribonucleotide binding IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0032559 adenyl ribonucleotide binding IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0032561 guanyl ribonucleotide binding IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0033554 cellular response to stress IEP Lactuca Sativa GO terms from Neighborhoods
CC GO:0033588 elongator holoenzyme complex IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0034470 ncRNA processing IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0034511 U3 snoRNA binding IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0034641 cellular nitrogen compound metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0034660 ncRNA metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0036094 small molecule binding IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0042254 ribosome biogenesis IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0043167 ion binding IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0043168 anion binding IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0043170 macromolecule metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
CC GO:0043226 organelle IEP Lactuca Sativa GO terms from Neighborhoods
CC GO:0043227 membrane-bounded organelle IEP Lactuca Sativa GO terms from Neighborhoods
CC GO:0043229 intracellular organelle IEP Lactuca Sativa GO terms from Neighborhoods
CC GO:0043231 intracellular membrane-bounded organelle IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0044085 cellular component biogenesis IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0044237 cellular metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0044238 primary metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0046037 GMP metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0046483 heterocycle metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0051020 GTPase binding IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0051082 unfolded protein binding IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0051716 cellular response to stimulus IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0070006 metalloaminopeptidase activity IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0071840 cellular component organization or biogenesis IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0090304 nucleic acid metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0097159 organic cyclic compound binding IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0097367 carbohydrate derivative binding IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0140098 catalytic activity, acting on RNA IEP Lactuca Sativa GO terms from Neighborhoods
CC GO:0140513 nuclear protein-containing complex IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:1901265 nucleoside phosphate binding IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:1901360 organic cyclic compound metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:1901363 heterocyclic compound binding IEP Lactuca Sativa GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR003428 MAM33 81 260
No external refs found!