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  5. Lsat_1_v5_gn_9_45140.1

Lsat_1_v5_gn_9_45140.1 (CRP1)


Aliases : CRP1

Description : mRNA stability factor *(CRP1)


Gene families : OG0003288 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0003288_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Lactuca sativa (Lsa) PCC: Lsat_1_v5_gn_9_45140.1
Cluster Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm): Cluster_218

Target Alias Description ECC score Gene Family Method Actions
Bra027468 EXA1 susceptibility factor *(EXA1) 0.01 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0003830 beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0004386 helicase activity IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0006487 protein N-linked glycosylation IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0006777 Mo-molybdopterin cofactor biosynthetic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0006813 potassium ion transport IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0008375 acetylglucosaminyltransferase activity IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0010024 phytochromobilin biosynthetic process IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0015079 potassium ion transmembrane transporter activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0016636 oxidoreductase activity, acting on the CH-CH group of donors, iron-sulfur protein as acceptor IEP Lactuca Sativa GO terms from Neighborhoods
CC GO:0019008 molybdopterin synthase complex IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0019720 Mo-molybdopterin cofactor metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0032324 molybdopterin cofactor biosynthetic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0033013 tetrapyrrole metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0033014 tetrapyrrole biosynthetic process IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0035596 methylthiotransferase activity IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0043545 molybdopterin cofactor metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0043648 dicarboxylic acid metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0043650 dicarboxylic acid biosynthetic process IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0050497 alkylthioltransferase activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0050897 cobalt ion binding IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0051189 prosthetic group metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0051202 phytochromobilin metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0051536 iron-sulfur cluster binding IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0051539 4 iron, 4 sulfur cluster binding IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0051540 metal cluster binding IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0071586 CAAX-box protein processing IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0071805 potassium ion transmembrane transport IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0140103 catalytic activity, acting on a glycoprotein IEP Lactuca Sativa GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_rpt 294 323
IPR002885 Pentatricopeptide_rpt 465 512
IPR002885 Pentatricopeptide_rpt 610 653
IPR002885 Pentatricopeptide_rpt 327 372
IPR002885 Pentatricopeptide_rpt 186 231
IPR002885 Pentatricopeptide_rpt 524 584
IPR002885 Pentatricopeptide_rpt 384 444
No external refs found!