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Aliases : ESP4
Description : component *(Symplekin/Pta1) of Cleavage and Polyadenylation Specificity Factor (CPSF) complex
Gene families : OG0003461 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0003461_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Lactuca sativa (Lsa) PCC: Lsat_1_v5_gn_9_34640.1 | |
| Cluster | Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm): Cluster_22 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| Lsat_1_v5_gn_5_180321.1 | No alias | not classified | 0.03 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| CC | GO:0000139 | Golgi membrane | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0000184 | nuclear-transcribed mRNA catabolic process, nonsense-mediated decay | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0000956 | nuclear-transcribed mRNA catabolic process | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0003676 | nucleic acid binding | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0003684 | damaged DNA binding | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0003723 | RNA binding | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0003724 | RNA helicase activity | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0003899 | DNA-directed 5'-3' RNA polymerase activity | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0004197 | cysteine-type endopeptidase activity | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0004198 | calcium-dependent cysteine-type endopeptidase activity | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0004842 | ubiquitin-protein transferase activity | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0005049 | nuclear export signal receptor activity | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0005488 | binding | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0005515 | protein binding | IEP | Lactuca Sativa GO terms from Neighborhoods |
| CC | GO:0005643 | nuclear pore | IEP | Lactuca Sativa GO terms from Neighborhoods |
| CC | GO:0005694 | chromosome | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0006351 | DNA-templated transcription | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0006357 | regulation of transcription by RNA polymerase II | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0006366 | transcription by RNA polymerase II | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0006401 | RNA catabolic process | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0006402 | mRNA catabolic process | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0006606 | protein import into nucleus | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0006810 | transport | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0006886 | intracellular protein transport | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0006890 | retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0006906 | vesicle fusion | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0006913 | nucleocytoplasmic transport | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0006996 | organelle organization | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0007030 | Golgi organization | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0008094 | ATP-dependent activity, acting on DNA | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0008104 | protein localization | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0008186 | ATP-dependent activity, acting on RNA | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0010629 | negative regulation of gene expression | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0015031 | protein transport | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0016050 | vesicle organization | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0016192 | vesicle-mediated transport | IEP | Lactuca Sativa GO terms from Neighborhoods |
| CC | GO:0016592 | mediator complex | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0016746 | acyltransferase activity | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0016755 | aminoacyltransferase activity | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0017056 | structural constituent of nuclear pore | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0019787 | ubiquitin-like protein transferase activity | IEP | Lactuca Sativa GO terms from Neighborhoods |
| CC | GO:0030118 | clathrin coat | IEP | Lactuca Sativa GO terms from Neighborhoods |
| CC | GO:0030125 | clathrin vesicle coat | IEP | Lactuca Sativa GO terms from Neighborhoods |
| CC | GO:0030130 | clathrin coat of trans-Golgi network vesicle | IEP | Lactuca Sativa GO terms from Neighborhoods |
| CC | GO:0030132 | clathrin coat of coated pit | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0033036 | macromolecule localization | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0034062 | 5'-3' RNA polymerase activity | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0034504 | protein localization to nucleus | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0034655 | nucleobase-containing compound catabolic process | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0042393 | histone binding | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0045184 | establishment of protein localization | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0046907 | intracellular transport | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0048280 | vesicle fusion with Golgi apparatus | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0048284 | organelle fusion | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0051169 | nuclear transport | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0051170 | import into nucleus | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0051179 | localization | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0051234 | establishment of localization | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0051641 | cellular localization | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0051649 | establishment of localization in cell | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0061024 | membrane organization | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0061025 | membrane fusion | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0061666 | UFM1 ligase activity | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0070727 | cellular macromolecule localization | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0071568 | UFM1 transferase activity | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0071569 | protein ufmylation | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0071702 | organic substance transport | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0071705 | nitrogen compound transport | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0090174 | organelle membrane fusion | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0097747 | RNA polymerase activity | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0140097 | catalytic activity, acting on DNA | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0140098 | catalytic activity, acting on RNA | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0140104 | molecular carrier activity | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0140142 | nucleocytoplasmic carrier activity | IEP | Lactuca Sativa GO terms from Neighborhoods |
| CC | GO:0140513 | nuclear protein-containing complex | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0140640 | catalytic activity, acting on a nucleic acid | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0140657 | ATP-dependent activity | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0140658 | ATP-dependent chromatin remodeler activity | IEP | Lactuca Sativa GO terms from Neighborhoods |
| No external refs found! |