Lsat_1_v5_gn_9_11361.1

Description : component *(uL14) of large ribosomal-subunit (LSU) proteome

Gene families : OG0001620 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0001620_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Lactuca sativa (Lsa) PCC: Lsat_1_v5_gn_9_11361.1
Cluster	Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm): Cluster_4

Target	Alias	Description	ECC score	Gene Family Method
Bra001104	SDG31, SUVR4	component *(uL14) of large ribosomal-subunit (LSU)...	0.07	OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Bra030573	No alias	component *(uL14) of large ribosomal-subunit (LSU) proteome	0.02	OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Bra040197	SDG31, SUVR4	component *(uL14) of large ribosomal-subunit (LSU)...	0.01	OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr3.04247	emb2171, RPL23	component *(uL14) of large ribosomal-subunit (LSU) proteome	0.04	OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003676	nucleic acid binding	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0003697	single-stranded DNA binding	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0003723	RNA binding	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0003883	CTP synthase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0003922	GMP synthase (glutamine-hydrolyzing) activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0003924	GTPase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0003937	IMP cyclohydrolase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0004055	argininosuccinate synthase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0004643	phosphoribosylaminoimidazolecarboxamide formyltransferase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0005525	GTP binding	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006163	purine nucleotide metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006164	purine nucleotide biosynthetic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006177	GMP biosynthetic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006220	pyrimidine nucleotide metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006221	pyrimidine nucleotide biosynthetic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006520	amino acid metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006525	arginine metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006526	arginine biosynthetic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006753	nucleoside phosphate metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0008097	5S rRNA binding	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0008483	transaminase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0009064	glutamine family amino acid metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0009084	glutamine family amino acid biosynthetic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0009117	nucleotide metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0009123	nucleoside monophosphate metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0009124	nucleoside monophosphate biosynthetic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0009126	purine nucleoside monophosphate metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0009127	purine nucleoside monophosphate biosynthetic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0009156	ribonucleoside monophosphate biosynthetic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0009161	ribonucleoside monophosphate metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0009165	nucleotide biosynthetic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0009167	purine ribonucleoside monophosphate metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0009168	purine ribonucleoside monophosphate biosynthetic process	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0016462	pyrophosphatase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0016742	hydroxymethyl-, formyl- and related transferase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0016769	transferase activity, transferring nitrogenous groups	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0016814	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0016874	ligase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0016879	ligase activity, forming carbon-nitrogen bonds	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0016884	carbon-nitrogen ligase activity, with glutamine as amido-N-donor	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0017076	purine nucleotide binding	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0017111	ribonucleoside triphosphate phosphatase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0018130	heterocycle biosynthetic process	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0019001	guanyl nucleotide binding	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0019238	cyclohydrolase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0019438	aromatic compound biosynthetic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0019637	organophosphate metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0032561	guanyl ribonucleotide binding	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0034654	nucleobase-containing compound biosynthetic process	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0036094	small molecule binding	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0044281	small molecule metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0046037	GMP metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0046483	heterocycle metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0055086	nucleobase-containing small molecule metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0072521	purine-containing compound metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0072522	purine-containing compound biosynthetic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0072527	pyrimidine-containing compound metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0072528	pyrimidine-containing compound biosynthetic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0090407	organophosphate biosynthetic process	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0097159	organic cyclic compound binding	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:1901293	nucleoside phosphate biosynthetic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:1901360	organic cyclic compound metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:1901362	organic cyclic compound biosynthetic process	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:1901363	heterocyclic compound binding	IEP	Lactuca Sativa GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR000218	Ribosomal_uL14	22	140

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Lsat_1_v5_gn_9_11361.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation