Lsat_1_v5_gn_9_11301.1 (IRX5, NWS2, CESA4)

Aliases : IRX5, NWS2, CESA4

Description : catalytic component *(CesA) of cellulose synthase complex

Gene families : OG0000413 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0000413_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Lactuca sativa (Lsa) PCC: Lsat_1_v5_gn_9_11301.1
Cluster	Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm): Cluster_44

Target	Alias	Description	ECC score	Gene Family Method	Actions
Bra033714	IRX5, NWS2, CESA4	catalytic component *(CesA) of cellulose synthase complex	0.02	OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol

Type	GO Term	Name	Evidence	Source
BP	GO:0000271	polysaccharide biosynthetic process	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0005975	carbohydrate metabolic process	None	Extended
BP	GO:0005976	polysaccharide metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008194	UDP-glycosyltransferase activity	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009250	glucan biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
CC	GO:0016020	membrane	IEA	Interproscan
BP	GO:0016051	carbohydrate biosynthetic process	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016757	glycosyltransferase activity	None	Extended
MF	GO:0016758	hexosyltransferase activity	None	Extended
MF	GO:0016759	cellulose synthase activity	None	Extended
MF	GO:0016760	cellulose synthase (UDP-forming) activity	IEA	Interproscan
BP	GO:0030243	cellulose metabolic process	None	Extended
BP	GO:0030244	cellulose biosynthetic process	IEA	Interproscan
MF	GO:0035251	UDP-glucosyltransferase activity	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044042	glucan metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
MF	GO:0046527	glucosyltransferase activity	None	Extended
BP	GO:0051273	beta-glucan metabolic process	None	Extended
BP	GO:0051274	beta-glucan biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000148	1,3-beta-D-glucan synthase complex	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0003843	1,3-beta-D-glucan synthase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0005507	copper ion binding	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006074	(1->3)-beta-D-glucan metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006075	(1->3)-beta-D-glucan biosynthetic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006308	DNA catabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0010215	cellulose microfibril organization	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0016491	oxidoreductase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0016788	hydrolase activity, acting on ester bonds	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0019439	aromatic compound catabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0030198	extracellular matrix organization	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0034655	nucleobase-containing compound catabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0043062	extracellular structure organization	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0043531	ADP binding	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0044248	cellular catabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0044270	cellular nitrogen compound catabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0046700	heterocycle catabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:0098796	membrane protein complex	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:0098797	plasma membrane protein complex	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:1901361	organic cyclic compound catabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:1902494	catalytic complex	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:1990234	transferase complex	IEP	Lactuca Sativa GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR005150	Cellulose_synth	284	1019
IPR027934	CES_Znf_RING	18	85

External Links

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Lsat_1_v5_gn_9_11301.1 (IRX5, NWS2, CESA4)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation