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  5. Lsat_1_v5_gn_8_8781.1

Lsat_1_v5_gn_8_8781.1 (SMC2B, ATSMC2)


Aliases : SMC2B, ATSMC2

Description : component *(CAP-E2/SMC2) of condensin I/II complex


Gene families : OG0004613 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0004613_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Lactuca sativa (Lsa) PCC: Lsat_1_v5_gn_8_8781.1
Cluster Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm): Cluster_50

Target Alias Description ECC score Gene Family Method Actions
Spov3_chr4.00727 SMC2B, ATSMC2 component *(CAP-E2/SMC2) of condensin I/II complex 0.02 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
CC GO:0005694 chromosome IEA Interproscan
BP GO:0051276 chromosome organization IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000796 condensin complex IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0003676 nucleic acid binding IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0003677 DNA binding IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0003682 chromatin binding IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0003774 cytoskeletal motor activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0003777 microtubule motor activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0003887 DNA-directed DNA polymerase activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0003896 DNA primase activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0003918 DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0006139 nucleobase-containing compound metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0006259 DNA metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0006260 DNA replication IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0006269 DNA replication, synthesis of RNA primer IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0006270 DNA replication initiation IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0006725 cellular aromatic compound metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0007017 microtubule-based process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0007018 microtubule-based movement IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0007076 mitotic chromosome condensation IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0008017 microtubule binding IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0008092 cytoskeletal protein binding IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0009262 deoxyribonucleotide metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0009263 deoxyribonucleotide biosynthetic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0010639 negative regulation of organelle organization IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0015631 tubulin binding IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0030261 chromosome condensation IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0032392 DNA geometric change IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0032508 DNA duplex unwinding IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0032780 negative regulation of ATP-dependent activity IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0033043 regulation of organelle organization IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0033044 regulation of chromosome organization IEP Lactuca Sativa GO terms from Neighborhoods
CC GO:0042555 MCM complex IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0043086 negative regulation of catalytic activity IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0043462 regulation of ATP-dependent activity IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0044092 negative regulation of molecular function IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0044877 protein-containing complex binding IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0046483 heterocycle metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0051095 regulation of helicase activity IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0051097 negative regulation of helicase activity IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0051129 negative regulation of cellular component organization IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0071103 DNA conformation change IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0090304 nucleic acid metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0140097 catalytic activity, acting on DNA IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0140657 ATP-dependent activity IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:1901360 organic cyclic compound metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:1903047 mitotic cell cycle process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:1905462 regulation of DNA duplex unwinding IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:1905463 negative regulation of DNA duplex unwinding IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:1905774 regulation of DNA helicase activity IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:1905775 negative regulation of DNA helicase activity IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:2001251 negative regulation of chromosome organization IEP Lactuca Sativa GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR010935 SMC_hinge 518 638
IPR003395 RecF/RecN/SMC_N 2 428
IPR003395 RecF/RecN/SMC_N 872 1161
No external refs found!