Lsat_1_v5_gn_8_60021.1 (MCM5)

Aliases : MCM5

Description : component *(MCM5) of MCM replicative DNA helicase complex

Gene families : OG0000378 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0000378_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Lactuca sativa (Lsa) PCC: Lsat_1_v5_gn_8_60021.1
Cluster	Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm): Cluster_160

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
BP	GO:0006996	organelle organization	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
BP	GO:0032392	DNA geometric change	None	Extended
BP	GO:0032508	DNA duplex unwinding	IEA	Interproscan
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0051276	chromosome organization	None	Extended
BP	GO:0071103	DNA conformation change	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000796	condensin complex	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0003682	chromatin binding	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0003774	cytoskeletal motor activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0003777	microtubule motor activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0003887	DNA-directed DNA polymerase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0003896	DNA primase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0003916	DNA topoisomerase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0003918	DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:0005694	chromosome	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:0005750	mitochondrial respiratory chain complex III	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006259	DNA metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006260	DNA replication	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006265	DNA topological change	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006269	DNA replication, synthesis of RNA primer	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006270	DNA replication initiation	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006275	regulation of DNA replication	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0007017	microtubule-based process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0007018	microtubule-based movement	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0007076	mitotic chromosome condensation	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0008017	microtubule binding	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0008092	cytoskeletal protein binding	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0008608	attachment of spindle microtubules to kinetochore	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0009262	deoxyribonucleotide metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0009263	deoxyribonucleotide biosynthetic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0010639	negative regulation of organelle organization	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0015631	tubulin binding	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0022402	cell cycle process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0030261	chromosome condensation	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:0031262	Ndc80 complex	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0032780	negative regulation of ATP-dependent activity	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:0032991	protein-containing complex	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0033043	regulation of organelle organization	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0033044	regulation of chromosome organization	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0034061	DNA polymerase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0034641	cellular nitrogen compound metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:0042555	MCM complex	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0043086	negative regulation of catalytic activity	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0043462	regulation of ATP-dependent activity	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0044092	negative regulation of molecular function	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0044877	protein-containing complex binding	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:0045275	respiratory chain complex III	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0046483	heterocycle metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0051052	regulation of DNA metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0051095	regulation of helicase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0051097	negative regulation of helicase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0051128	regulation of cellular component organization	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0051129	negative regulation of cellular component organization	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0051315	attachment of mitotic spindle microtubules to kinetochore	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:0070069	cytochrome complex	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:0070469	respirasome	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0090304	nucleic acid metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0140097	catalytic activity, acting on DNA	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0140640	catalytic activity, acting on a nucleic acid	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0140657	ATP-dependent activity	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:0180019	Knl1/Spc105 complex	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:1901360	organic cyclic compound metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:1902495	transmembrane transporter complex	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:1903047	mitotic cell cycle process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:1905462	regulation of DNA duplex unwinding	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:1905463	negative regulation of DNA duplex unwinding	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:1905774	regulation of DNA helicase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:1905775	negative regulation of DNA helicase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:1990351	transporter complex	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:2001251	negative regulation of chromosome organization	IEP	Lactuca Sativa GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR033762	MCM_OB	141	276
IPR001208	MCM_dom	319	541
IPR041562	MCM_lid	558	648
IPR027925	MCM_N	36	133

External Links

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Lsat_1_v5_gn_8_60021.1 (MCM5)

Expression Profile

Co-expression Networks

Functional Annotation