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  5. Bra007416

Bra007416 (CSY3)


Aliases : CSY3

Description : citrate synthase


Gene families : OG0002697 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0002697_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa (Bra) PCC: Bra007416
Cluster Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm): Cluster_46

Target Alias Description ECC score Gene Family Method Actions
Bra007417 CSY2 citrate synthase 0.01 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol

Type GO Term Name Evidence Source
BP GO:0006099 tricarboxylic acid cycle IEA Interproscan
MF GO:0046912 acyltransferase activity, acyl groups converted into alkyl on transfer IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000149 SNARE binding IEP Brassica rapa GO terms from Neighborhoods
BP GO:0000724 double-strand break repair via homologous recombination IEP Brassica rapa GO terms from Neighborhoods
BP GO:0000725 recombinational repair IEP Brassica rapa GO terms from Neighborhoods
MF GO:0003723 RNA binding IEP Brassica rapa GO terms from Neighborhoods
MF GO:0003916 DNA topoisomerase activity IEP Brassica rapa GO terms from Neighborhoods
MF GO:0003918 DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity IEP Brassica rapa GO terms from Neighborhoods
MF GO:0004146 dihydrofolate reductase activity IEP Brassica rapa GO terms from Neighborhoods
CC GO:0005694 chromosome IEP Brassica rapa GO terms from Neighborhoods
CC GO:0005741 mitochondrial outer membrane IEP Brassica rapa GO terms from Neighborhoods
BP GO:0006259 DNA metabolic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0006265 DNA topological change IEP Brassica rapa GO terms from Neighborhoods
BP GO:0006302 double-strand break repair IEP Brassica rapa GO terms from Neighborhoods
BP GO:0006310 DNA recombination IEP Brassica rapa GO terms from Neighborhoods
BP GO:0006575 cellular modified amino acid metabolic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0006760 folic acid-containing compound metabolic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0009396 folic acid-containing compound biosynthetic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0009890 negative regulation of biosynthetic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0009892 negative regulation of metabolic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0010558 negative regulation of macromolecule biosynthetic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0010605 negative regulation of macromolecule metabolic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0010629 negative regulation of gene expression IEP Brassica rapa GO terms from Neighborhoods
MF GO:0016645 oxidoreductase activity, acting on the CH-NH group of donors IEP Brassica rapa GO terms from Neighborhoods
MF GO:0016646 oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor IEP Brassica rapa GO terms from Neighborhoods
CC GO:0019867 outer membrane IEP Brassica rapa GO terms from Neighborhoods
MF GO:0019905 syntaxin binding IEP Brassica rapa GO terms from Neighborhoods
BP GO:0031047 regulatory ncRNA-mediated gene silencing IEP Brassica rapa GO terms from Neighborhoods
BP GO:0031324 negative regulation of cellular metabolic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0031327 negative regulation of cellular biosynthetic process IEP Brassica rapa GO terms from Neighborhoods
CC GO:0031966 mitochondrial membrane IEP Brassica rapa GO terms from Neighborhoods
CC GO:0031968 organelle outer membrane IEP Brassica rapa GO terms from Neighborhoods
BP GO:0042398 cellular modified amino acid biosynthetic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0042558 pteridine-containing compound metabolic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0042559 pteridine-containing compound biosynthetic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0046653 tetrahydrofolate metabolic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0046654 tetrahydrofolate biosynthetic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0071103 DNA conformation change IEP Brassica rapa GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR002020 Citrate_synthase 88 434
No external refs found!