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  5. Lsat_1_v5_gn_8_29280.1

Lsat_1_v5_gn_8_29280.1


Description : not classified


Gene families : OG0000056 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0000056_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Lactuca sativa (Lsa) PCC: Lsat_1_v5_gn_8_29280.1
Cluster Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm): Cluster_130

Target Alias Description ECC score Gene Family Method Actions
Lsat_1_v5_gn_8_157881.1 No alias not classified 0.03 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0006281 DNA repair IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0006974 DNA damage response IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0008081 phosphoric diester hydrolase activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0008483 transaminase activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0009916 alternative oxidase activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0015291 secondary active transmembrane transporter activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0015297 antiporter activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0016679 oxidoreductase activity, acting on diphenols and related substances as donors IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0016682 oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0016769 transferase activity, transferring nitrogenous groups IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0019842 vitamin binding IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0030170 pyridoxal phosphate binding IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0033554 cellular response to stress IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0042578 phosphoric ester hydrolase activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0042910 xenobiotic transmembrane transporter activity IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0051716 cellular response to stimulus IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0070279 vitamin B6 binding IEP Lactuca Sativa GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR013210 LRR_N_plant-typ 29 66
IPR001611 Leu-rich_rpt 226 290
IPR001611 Leu-rich_rpt 540 599
IPR001611 Leu-rich_rpt 123 180
IPR001611 Leu-rich_rpt 352 408
IPR001611 Leu-rich_rpt 617 673
IPR001611 Leu-rich_rpt 760 782
IPR001611 Leu-rich_rpt 418 440
No external refs found!