- Species
- Tools
- Expression Profiles
- Compare profiles
- Create heatmap
- Export expression levels
- Expression Specificity
- Compare specificities
- Find specific profiles
- Co-expression Networks
- Create custom network
- Find enriched clusters
- Search
Aliases : AMSH1
Description : deubiquitinase *(AMSH)
Gene families : OG0004666 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0004666_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Lactuca sativa (Lsa) PCC: Lsat_1_v5_gn_8_144760.1 | |
| Cluster | Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm): Cluster_191 |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0005515 | protein binding | IEA | Interproscan |
| MF | GO:0008233 | peptidase activity | IEA | Interproscan |
| MF | GO:0008237 | metallopeptidase activity | IEA | Interproscan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| CC | GO:0000139 | Golgi membrane | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0003682 | chromatin binding | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0003714 | transcription corepressor activity | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0004484 | mRNA guanylyltransferase activity | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0004721 | phosphoprotein phosphatase activity | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0005338 | nucleotide-sugar transmembrane transporter activity | IEP | Lactuca Sativa GO terms from Neighborhoods |
| CC | GO:0005681 | spliceosomal complex | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0006354 | DNA-templated transcription elongation | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0006368 | transcription elongation by RNA polymerase II | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0006370 | 7-methylguanosine mRNA capping | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0006487 | protein N-linked glycosylation | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0006807 | nitrogen compound metabolic process | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0006810 | transport | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0006891 | intra-Golgi vesicle-mediated transport | IEP | Lactuca Sativa GO terms from Neighborhoods |
| CC | GO:0008023 | transcription elongation factor complex | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0008138 | protein tyrosine/serine/threonine phosphatase activity | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0008192 | RNA guanylyltransferase activity | IEP | Lactuca Sativa GO terms from Neighborhoods |
| CC | GO:0008250 | oligosaccharyltransferase complex | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0009452 | 7-methylguanosine RNA capping | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0009987 | cellular process | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0015165 | pyrimidine nucleotide-sugar transmembrane transporter activity | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0015780 | nucleotide-sugar transmembrane transport | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0015932 | nucleobase-containing compound transmembrane transporter activity | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0016070 | RNA metabolic process | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0016192 | vesicle-mediated transport | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0016311 | dephosphorylation | IEP | Lactuca Sativa GO terms from Neighborhoods |
| CC | GO:0016593 | Cdc73/Paf1 complex | IEP | Lactuca Sativa GO terms from Neighborhoods |
| CC | GO:0030117 | membrane coat | IEP | Lactuca Sativa GO terms from Neighborhoods |
| CC | GO:0031090 | organelle membrane | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0032774 | RNA biosynthetic process | IEP | Lactuca Sativa GO terms from Neighborhoods |
| CC | GO:0032991 | protein-containing complex | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0034654 | nucleobase-containing compound biosynthetic process | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0036211 | protein modification process | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0036260 | RNA capping | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0043170 | macromolecule metabolic process | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0043412 | macromolecule modification | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0043687 | post-translational protein modification | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0044877 | protein-containing complex binding | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0046907 | intracellular transport | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0048193 | Golgi vesicle transport | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0051179 | localization | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0051234 | establishment of localization | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0051641 | cellular localization | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0051649 | establishment of localization in cell | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0070403 | NAD+ binding | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0070568 | guanylyltransferase activity | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0070647 | protein modification by small protein conjugation or removal | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0071702 | organic substance transport | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0071705 | nitrogen compound transport | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0090304 | nucleic acid metabolic process | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0090481 | pyrimidine nucleotide-sugar transmembrane transport | IEP | Lactuca Sativa GO terms from Neighborhoods |
| CC | GO:0098588 | bounding membrane of organelle | IEP | Lactuca Sativa GO terms from Neighborhoods |
| CC | GO:0098796 | membrane protein complex | IEP | Lactuca Sativa GO terms from Neighborhoods |
| CC | GO:0140513 | nuclear protein-containing complex | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:1901264 | carbohydrate derivative transport | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:1901505 | carbohydrate derivative transmembrane transporter activity | IEP | Lactuca Sativa GO terms from Neighborhoods |
| No external refs found! |