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  5. Lsat_1_v5_gn_8_102800.1

Lsat_1_v5_gn_8_102800.1


Description : component *(eS4) of small ribosomal-subunit (SSU) proteome


Gene families : OG0000408 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0000408_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Lactuca sativa (Lsa) PCC: Lsat_1_v5_gn_8_102800.1
Cluster Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm): Cluster_28

Target Alias Description ECC score Gene Family Method Actions
Bra005923 No alias component *(eS4) of small ribosomal-subunit (SSU) proteome 0.11 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Bra020369 No alias component *(eS4) of small ribosomal-subunit (SSU) proteome 0.09 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Bra028708 No alias component *(eS4) of small ribosomal-subunit (SSU) proteome 0.15 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Mp8g03280.1 No alias component *(eS4) of small ribosomal-subunit (SSU) proteome 0.04 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr1.01225 No alias component *(eS4) of small ribosomal-subunit (SSU) proteome 0.1 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr2.02107 No alias component *(eS4) of small ribosomal-subunit (SSU) proteome 0.1 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr4.04362 No alias component *(eS4) of small ribosomal-subunit (SSU) proteome 0.07 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0004523 RNA-DNA hybrid ribonuclease activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0005198 structural molecule activity IEP Lactuca Sativa GO terms from Neighborhoods
CC GO:0005575 cellular_component IEP Lactuca Sativa GO terms from Neighborhoods
CC GO:0005840 ribosome IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0006412 translation IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0006414 translational elongation IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0006518 peptide metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0006807 nitrogen compound metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0008097 5S rRNA binding IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0008150 biological_process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0008152 metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0009058 biosynthetic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0009059 macromolecule biosynthetic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0009987 cellular process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0019538 protein metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0019843 rRNA binding IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0034641 cellular nitrogen compound metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0043043 peptide biosynthetic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0043170 macromolecule metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
CC GO:0043226 organelle IEP Lactuca Sativa GO terms from Neighborhoods
CC GO:0043228 non-membrane-bounded organelle IEP Lactuca Sativa GO terms from Neighborhoods
CC GO:0043229 intracellular organelle IEP Lactuca Sativa GO terms from Neighborhoods
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0043603 amide metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0043604 amide biosynthetic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0044237 cellular metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0044238 primary metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0044249 cellular biosynthetic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0071704 organic substance metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
CC GO:0110165 cellular anatomical entity IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:1901564 organonitrogen compound metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:1901566 organonitrogen compound biosynthetic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:1901576 organic substance biosynthetic process IEP Lactuca Sativa GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR013843 Ribosomal_eS4_N 3 39
IPR005824 KOW 177 210
IPR032277 Ribosomal_eS4_C 212 258
IPR002942 S4_RNA-bd 47 90
IPR013845 Ribosomal_eS4_central_region 95 169
No external refs found!