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  5. Lsat_1_v5_gn_7_93080.1

Lsat_1_v5_gn_7_93080.1 (CSC1, OSCA1.2)


Aliases : CSC1, OSCA1.2

Description : calcium-permeable channel *(OSCA)


Gene families : OG0032565 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Lactuca sativa (Lsa) PCC: Lsat_1_v5_gn_7_93080.1
Cluster Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm): Cluster_238


Type GO Term Name Evidence Source
CC GO:0016020 membrane IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0006352 DNA-templated transcription initiation IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0006364 rRNA processing IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0006367 transcription initiation at RNA polymerase II promoter IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0008173 RNA methyltransferase activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0008649 rRNA methyltransferase activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0016070 RNA metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0016072 rRNA metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0016538 cyclin-dependent protein serine/threonine kinase regulator activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0019207 kinase regulator activity IEP Lactuca Sativa GO terms from Neighborhoods
CC GO:0019867 outer membrane IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0019887 protein kinase regulator activity IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0034470 ncRNA processing IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0051536 iron-sulfur cluster binding IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0051540 metal cluster binding IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0090304 nucleic acid metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0140102 catalytic activity, acting on a rRNA IEP Lactuca Sativa GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR032880 Csc1/OSCA1-like_N 8 176
IPR003864 CSC1/OSCA1-like_7TM 371 643
IPR027815 CSC1/OSCA1-like_cyt 197 360
No external refs found!