Lsat_1_v5_gn_7_76521.1

Description : not classified

Gene families : OG0032576 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Lactuca sativa (Lsa) PCC: Lsat_1_v5_gn_7_76521.1
Cluster	Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm): Cluster_191

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005509	calcium ion binding	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005783	endoplasmic reticulum	IEA	Interproscan
BP	GO:0006873	intracellular monoatomic ion homeostasis	None	Extended
BP	GO:0006874	intracellular calcium ion homeostasis	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0019725	cellular homeostasis	None	Extended
BP	GO:0030003	intracellular monoatomic cation homeostasis	None	Extended
BP	GO:0032469	endoplasmic reticulum calcium ion homeostasis	IEA	Interproscan
BP	GO:0042592	homeostatic process	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
BP	GO:0048878	chemical homeostasis	None	Extended
BP	GO:0050801	monoatomic ion homeostasis	None	Extended
BP	GO:0055074	calcium ion homeostasis	None	Extended
BP	GO:0055080	monoatomic cation homeostasis	None	Extended
BP	GO:0055082	intracellular chemical homeostasis	None	Extended
BP	GO:0098771	inorganic ion homeostasis	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000154	rRNA modification	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:0000786	nucleosome	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0001510	RNA methylation	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0003676	nucleic acid binding	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0003677	DNA binding	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0003723	RNA binding	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0003950	NAD+ ADP-ribosyltransferase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0003968	RNA-dependent RNA polymerase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0005484	SNAP receptor activity	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:0005739	mitochondrion	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006284	base-excision repair	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006354	DNA-templated transcription elongation	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006368	transcription elongation by RNA polymerase II	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006487	protein N-linked glycosylation	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006890	retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:0008023	transcription elongation factor complex	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0008170	N-methyltransferase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:0008250	oligosaccharyltransferase complex	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0008408	3'-5' exonuclease activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0008649	rRNA methyltransferase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0009890	negative regulation of biosynthetic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0009892	negative regulation of metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0010558	negative regulation of macromolecule biosynthetic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0010605	negative regulation of macromolecule metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0010629	negative regulation of gene expression	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0016436	rRNA (uridine) methyltransferase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:0016593	Cdc73/Paf1 complex	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0016763	pentosyltransferase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:0030119	AP-type membrane coat adaptor complex	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:0030131	clathrin adaptor complex	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0030674	protein-macromolecule adaptor activity	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0031047	regulatory ncRNA-mediated gene silencing	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0031167	rRNA methylation	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0031324	negative regulation of cellular metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0031327	negative regulation of cellular biosynthetic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0032780	negative regulation of ATP-dependent activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0042030	ATPase inhibitor activity	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0043412	macromolecule modification	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0043462	regulation of ATP-dependent activity	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0044092	negative regulation of molecular function	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0060090	molecular adaptor activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0060590	ATPase regulator activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0070042	rRNA (uridine-N3-)-methyltransferase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0070475	rRNA base methylation	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0140102	catalytic activity, acting on a rRNA	IEP	Lactuca Sativa GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR012879	CCDC47	176	494

External Links

No external refs found!

Lsat_1_v5_gn_7_76521.1

Expression Profile

Co-expression Networks

Functional Annotation