Lsat_1_v5_gn_7_74681.1 (ARF1)

Aliases : ARF1

Description : ARF-type transcription factor

Gene families : OG0001476 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0001476_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Lactuca sativa (Lsa) PCC: Lsat_1_v5_gn_7_74681.1
Cluster	Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm): Cluster_123

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009719	response to endogenous stimulus	None	Extended
BP	GO:0009725	response to hormone	IEA	Interproscan
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010033	response to organic substance	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0042221	response to chemical	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0003774	cytoskeletal motor activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0003777	microtubule motor activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0004645	1,4-alpha-oligoglucan phosphorylase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0004842	ubiquitin-protein transferase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006414	translational elongation	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006793	phosphorus metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006796	phosphate-containing compound metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0007017	microtubule-based process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0007018	microtubule-based movement	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0007186	G protein-coupled receptor signaling pathway	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0008017	microtubule binding	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0008131	primary amine oxidase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0008184	glycogen phosphorylase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0015018	galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0015020	glucuronosyltransferase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0015631	tubulin binding	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0016051	carbohydrate biosynthetic process	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0016301	kinase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0016310	phosphorylation	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0016641	oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0016740	transferase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0016755	aminoacyltransferase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0016758	hexosyltransferase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0016780	phosphotransferase activity, for other substituted phosphate groups	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0017076	purine nucleotide binding	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0019787	ubiquitin-like protein transferase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0030554	adenyl nucleotide binding	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0031683	G-protein beta/gamma-subunit complex binding	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0032553	ribonucleotide binding	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0032555	purine ribonucleotide binding	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0032559	adenyl ribonucleotide binding	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0036094	small molecule binding	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0043168	anion binding	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0043531	ADP binding	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0044237	cellular metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0071704	organic substance metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0097367	carbohydrate derivative binding	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:1901265	nucleoside phosphate binding	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:2001070	starch binding	IEP	Lactuca Sativa GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR033389	AUX/IAA_dom	606	649
IPR033389	AUX/IAA_dom	556	594
IPR003340	B3_DNA-bd	152	252
IPR010525	ARF_dom	278	360

External Links

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Lsat_1_v5_gn_7_74681.1 (ARF1)

Expression Profile

Co-expression Networks

Functional Annotation