Lsat_1_v5_gn_7_40461.1 (SAND, ABCB18, PGP18)

Aliases : SAND, ABCB18, PGP18

Description : subfamily ABCB transporter

Gene families : OG0008658 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Lactuca sativa (Lsa) PCC: Lsat_1_v5_gn_7_40461.1
Cluster	Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm): Cluster_69

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005215	transporter activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006810	transport	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0015399	primary active transmembrane transporter activity	None	Extended
CC	GO:0016020	membrane	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0022804	active transmembrane transporter activity	None	Extended
MF	GO:0022857	transmembrane transporter activity	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0042626	ATPase-coupled transmembrane transporter activity	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0055085	transmembrane transport	IEA	Interproscan
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140359	ABC-type transporter activity	IEA	Interproscan
MF	GO:0140657	ATP-dependent activity	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000428	DNA-directed RNA polymerase complex	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0003824	catalytic activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0003993	acid phosphatase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0004061	arylformamidase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0004497	monooxygenase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0004672	protein kinase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0005506	iron ion binding	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:0005666	RNA polymerase III complex	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006383	transcription by RNA polymerase III	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006468	protein phosphorylation	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006568	tryptophan metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006569	tryptophan catabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006576	biogenic amine metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006586	indolalkylamine metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006793	phosphorus metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006796	phosphate-containing compound metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0007186	G protein-coupled receptor signaling pathway	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0009063	amino acid catabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0009072	aromatic amino acid metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0009074	aromatic amino acid family catabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0016054	organic acid catabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0016301	kinase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0016310	phosphorylation	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0016538	cyclin-dependent protein serine/threonine kinase regulator activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0016705	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0016740	transferase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0016773	phosphotransferase activity, alcohol group as acceptor	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0016811	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0019207	kinase regulator activity	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0019439	aromatic compound catabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0019441	tryptophan catabolic process to kynurenine	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0019538	protein metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0019887	protein kinase regulator activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0020037	heme binding	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0030246	carbohydrate binding	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:0030880	RNA polymerase complex	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0031683	G-protein beta/gamma-subunit complex binding	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0036211	protein modification process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0042180	cellular ketone metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0042430	indole-containing compound metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0042436	indole-containing compound catabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0042537	benzene-containing compound metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0043412	macromolecule modification	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0044237	cellular metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0044270	cellular nitrogen compound catabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0044282	small molecule catabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0046395	carboxylic acid catabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0046700	heterocycle catabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0046906	tetrapyrrole binding	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:0055029	nuclear DNA-directed RNA polymerase complex	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:0061695	transferase complex, transferring phosphorus-containing groups	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0070189	kynurenine metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0140096	catalytic activity, acting on a protein	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:1901361	organic cyclic compound catabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:1901564	organonitrogen compound metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:1901606	alpha-amino acid catabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR003439	ABC_transporter-like_ATP-bd	1021	1167
IPR003439	ABC_transporter-like_ATP-bd	384	533
IPR011527	ABC1_TM_dom	43	314
IPR011527	ABC1_TM_dom	677	944

External Links

No external refs found!

Lsat_1_v5_gn_7_40461.1 (SAND, ABCB18, PGP18)

Expression Profile

Co-expression Networks

Functional Annotation