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  5. Lsat_1_v5_gn_6_80720.1

Lsat_1_v5_gn_6_80720.1 (Nup98a, DRA2)


Aliases : Nup98a, DRA2

Description : nucleoporin of nuclear pore complex *(NUP98)


Gene families : OG0000121 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0000121_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Lactuca sativa (Lsa) PCC: Lsat_1_v5_gn_6_80720.1
Cluster Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm): Cluster_22


Type GO Term Name Evidence Source
CC GO:0005643 nuclear pore IEA Interproscan
BP GO:0006913 nucleocytoplasmic transport IEA Interproscan
MF GO:0017056 structural constituent of nuclear pore IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000290 deadenylation-dependent decapping of nuclear-transcribed mRNA IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0003712 transcription coregulator activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0004619 phosphoglycerate mutase activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0004842 ubiquitin-protein transferase activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0005515 protein binding IEP Lactuca Sativa GO terms from Neighborhoods
CC GO:0005669 transcription factor TFIID complex IEP Lactuca Sativa GO terms from Neighborhoods
CC GO:0005694 chromosome IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0006357 regulation of transcription by RNA polymerase II IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0006366 transcription by RNA polymerase II IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0006401 RNA catabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0006402 mRNA catabolic process IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0008047 enzyme activator activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0008094 ATP-dependent activity, acting on DNA IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0009890 negative regulation of biosynthetic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0009892 negative regulation of metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0010558 negative regulation of macromolecule biosynthetic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0010605 negative regulation of macromolecule metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0010629 negative regulation of gene expression IEP Lactuca Sativa GO terms from Neighborhoods
CC GO:0016459 myosin complex IEP Lactuca Sativa GO terms from Neighborhoods
CC GO:0016592 mediator complex IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0016755 aminoacyltransferase activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0016868 intramolecular transferase activity, phosphotransferases IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0019787 ubiquitin-like protein transferase activity IEP Lactuca Sativa GO terms from Neighborhoods
CC GO:0030118 clathrin coat IEP Lactuca Sativa GO terms from Neighborhoods
CC GO:0030125 clathrin vesicle coat IEP Lactuca Sativa GO terms from Neighborhoods
CC GO:0030130 clathrin coat of trans-Golgi network vesicle IEP Lactuca Sativa GO terms from Neighborhoods
CC GO:0030132 clathrin coat of coated pit IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0030976 thiamine pyrophosphate binding IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0031324 negative regulation of cellular metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0031327 negative regulation of cellular biosynthetic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0032012 regulation of ARF protein signal transduction IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0034655 nucleobase-containing compound catabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0040008 regulation of growth IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0042393 histone binding IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0043085 positive regulation of catalytic activity IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0044093 positive regulation of molecular function IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0045927 positive regulation of growth IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0046537 2,3-bisphosphoglycerate-independent phosphoglycerate mutase activity IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0046578 regulation of Ras protein signal transduction IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0050997 quaternary ammonium group binding IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0051056 regulation of small GTPase mediated signal transduction IEP Lactuca Sativa GO terms from Neighborhoods
CC GO:0090575 RNA polymerase II transcription regulator complex IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0110154 RNA decapping IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0110156 methylguanosine-cap decapping IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0140097 catalytic activity, acting on DNA IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:1902531 regulation of intracellular signal transduction IEP Lactuca Sativa GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR007230 Nup98_auto-Pept-S59_dom 858 1004
No external refs found!