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Aliases : SAC3B, AtSAC3B
Description : scaffold component *(GANP/SAC3) of TREX-2 mRNP trafficking complex
Gene families : OG0038778 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): No tree available for this family
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Lactuca sativa (Lsa) PCC: Lsat_1_v5_gn_6_69301.1 | |
| Cluster | Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm): Cluster_185 |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| CC | GO:0000151 | ubiquitin ligase complex | IEP | Lactuca Sativa GO terms from Neighborhoods |
| CC | GO:0000152 | nuclear ubiquitin ligase complex | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0003676 | nucleic acid binding | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0003677 | DNA binding | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0003697 | single-stranded DNA binding | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0003723 | RNA binding | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0003774 | cytoskeletal motor activity | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0003899 | DNA-directed 5'-3' RNA polymerase activity | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0003918 | DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0003968 | RNA-dependent RNA polymerase activity | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0004146 | dihydrofolate reductase activity | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0004386 | helicase activity | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0005198 | structural molecule activity | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0005488 | binding | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0005515 | protein binding | IEP | Lactuca Sativa GO terms from Neighborhoods |
| CC | GO:0005643 | nuclear pore | IEP | Lactuca Sativa GO terms from Neighborhoods |
| CC | GO:0005680 | anaphase-promoting complex | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0006351 | DNA-templated transcription | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0006575 | cellular modified amino acid metabolic process | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0006760 | folic acid-containing compound metabolic process | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0006913 | nucleocytoplasmic transport | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0009059 | macromolecule biosynthetic process | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0009396 | folic acid-containing compound biosynthetic process | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0009982 | pseudouridine synthase activity | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0016070 | RNA metabolic process | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0016646 | oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0016779 | nucleotidyltransferase activity | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0017056 | structural constituent of nuclear pore | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0018130 | heterocycle biosynthetic process | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0019438 | aromatic compound biosynthetic process | IEP | Lactuca Sativa GO terms from Neighborhoods |
| CC | GO:0030118 | clathrin coat | IEP | Lactuca Sativa GO terms from Neighborhoods |
| CC | GO:0030125 | clathrin vesicle coat | IEP | Lactuca Sativa GO terms from Neighborhoods |
| CC | GO:0030130 | clathrin coat of trans-Golgi network vesicle | IEP | Lactuca Sativa GO terms from Neighborhoods |
| CC | GO:0030132 | clathrin coat of coated pit | IEP | Lactuca Sativa GO terms from Neighborhoods |
| CC | GO:0031461 | cullin-RING ubiquitin ligase complex | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0032774 | RNA biosynthetic process | IEP | Lactuca Sativa GO terms from Neighborhoods |
| CC | GO:0032991 | protein-containing complex | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0034062 | 5'-3' RNA polymerase activity | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0034654 | nucleobase-containing compound biosynthetic process | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0042398 | cellular modified amino acid biosynthetic process | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0042558 | pteridine-containing compound metabolic process | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0042559 | pteridine-containing compound biosynthetic process | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0044271 | cellular nitrogen compound biosynthetic process | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0045892 | negative regulation of DNA-templated transcription | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0045934 | negative regulation of nucleobase-containing compound metabolic process | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0046483 | heterocycle metabolic process | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0046653 | tetrahydrofolate metabolic process | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0046654 | tetrahydrofolate biosynthetic process | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0051169 | nuclear transport | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0051172 | negative regulation of nitrogen compound metabolic process | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0051253 | negative regulation of RNA metabolic process | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0090304 | nucleic acid metabolic process | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0097159 | organic cyclic compound binding | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0097747 | RNA polymerase activity | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0140098 | catalytic activity, acting on RNA | IEP | Lactuca Sativa GO terms from Neighborhoods |
| CC | GO:0140513 | nuclear protein-containing complex | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0140640 | catalytic activity, acting on a nucleic acid | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:1901360 | organic cyclic compound metabolic process | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:1901362 | organic cyclic compound biosynthetic process | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:1901363 | heterocyclic compound binding | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:1902679 | negative regulation of RNA biosynthetic process | IEP | Lactuca Sativa GO terms from Neighborhoods |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR005062 | SAC3/GANP/THP3_conserved | 248 | 541 |
| No external refs found! |