Lsat_1_v5_gn_6_30901.1

Description : plastidial ribonucleoprotein *(CP29)

Gene families : OG0039291 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Lactuca sativa (Lsa) PCC: Lsat_1_v5_gn_6_30901.1
Cluster	Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm): Cluster_148

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000041	transition metal ion transport	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0000413	protein peptidyl-prolyl isomerization	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0002161	aminoacyl-tRNA editing activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0003755	peptidyl-prolyl cis-trans isomerase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0004017	adenylate kinase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0004109	coproporphyrinogen oxidase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0004664	prephenate dehydratase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0005215	transporter activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0005315	inorganic phosphate transmembrane transporter activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0005381	iron ion transmembrane transporter activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0005542	folic acid binding	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006082	organic acid metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006520	amino acid metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006553	lysine metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006558	L-phenylalanine metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006778	porphyrin-containing compound metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006779	porphyrin-containing compound biosynthetic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006817	phosphate ion transport	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006826	iron ion transport	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0008610	lipid biosynthetic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0008652	amino acid biosynthetic process	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0008839	4-hydroxy-tetrahydrodipicolinate reductase	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0008962	phosphatidylglycerophosphatase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0009058	biosynthetic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0009066	aspartate family amino acid metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0009067	aspartate family amino acid biosynthetic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0009072	aromatic amino acid metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0009073	aromatic amino acid family biosynthetic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0009085	lysine biosynthetic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0009089	lysine biosynthetic process via diaminopimelate	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0009094	L-phenylalanine biosynthetic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0009095	aromatic amino acid family biosynthetic process, prephenate pathway	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:0009521	photosystem	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:0009523	photosystem II	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:0009654	photosystem II oxygen evolving complex	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0015979	photosynthesis	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0016053	organic acid biosynthetic process	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0016624	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0016627	oxidoreductase activity, acting on the CH-CH group of donors	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0016628	oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0016634	oxidoreductase activity, acting on the CH-CH group of donors, oxygen as acceptor	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0016776	phosphotransferase activity, phosphate group as acceptor	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0016790	thiolester hydrolase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0016851	magnesium chelatase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0016853	isomerase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0016859	cis-trans isomerase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0016874	ligase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0016987	sigma factor activity	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0018193	peptidyl-amino acid modification	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0018208	peptidyl-proline modification	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0019205	nucleobase-containing compound kinase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0019438	aromatic compound biosynthetic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0019752	carboxylic acid metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:0019898	extrinsic component of membrane	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0022804	active transmembrane transporter activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0022857	transmembrane transporter activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0031406	carboxylic acid binding	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0033014	tetrapyrrole biosynthetic process	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0033218	amide binding	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0034755	iron ion transmembrane transport	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0043177	organic acid binding	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0043436	oxoacid metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0043648	dicarboxylic acid metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0044281	small molecule metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0044283	small molecule biosynthetic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0046394	carboxylic acid biosynthetic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0046451	diaminopimelate metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0050145	nucleoside monophosphate kinase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0051002	ligase activity, forming nitrogen-metal bonds	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0051003	ligase activity, forming nitrogen-metal bonds, forming coordination complexes	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0072341	modified amino acid binding	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0140359	ABC-type transporter activity	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:1901362	organic cyclic compound biosynthetic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:1901576	organic substance biosynthetic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:1901605	alpha-amino acid metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:1901607	alpha-amino acid biosynthetic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:1902221	erythrose 4-phosphate/phosphoenolpyruvate family amino acid metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:1902223	erythrose 4-phosphate/phosphoenolpyruvate family amino acid biosynthetic process	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:1990204	oxidoreductase complex	IEP	Lactuca Sativa GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR000504	RRM_dom	205	275
IPR000504	RRM_dom	96	166

External Links

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Lsat_1_v5_gn_6_30901.1

Expression Profile

Co-expression Networks

Functional Annotation