Lsat_1_v5_gn_6_17181.1 (ABCE2, ATRLI2, RLI2)

Aliases : ABCE2, ATRLI2, RLI2

Description : ribosome recycling factor *(RLI/ABCE)

Gene families : OG0009368 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Lactuca sativa (Lsa) PCC: Lsat_1_v5_gn_6_17181.1
Cluster	Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm): Cluster_47

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0000049	tRNA binding	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0000350	generation of catalytic spliceosome for second transesterification step	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0003676	nucleic acid binding	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0003723	RNA binding	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0004018	N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0004809	tRNA (guanine-N2-)-methyltransferase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0004812	aminoacyl-tRNA ligase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:0005730	nucleolus	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006082	organic acid metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006188	IMP biosynthetic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006396	RNA processing	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006399	tRNA metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006418	tRNA aminoacylation for protein translation	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006520	amino acid metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006777	Mo-molybdopterin cofactor biosynthetic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006807	nitrogen compound metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006886	intracellular protein transport	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0008033	tRNA processing	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0008134	transcription factor binding	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0008170	N-methyltransferase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0008173	RNA methyltransferase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0008175	tRNA methyltransferase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0008757	S-adenosylmethionine-dependent methyltransferase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0009123	nucleoside monophosphate metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0009124	nucleoside monophosphate biosynthetic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0009126	purine nucleoside monophosphate metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0009127	purine nucleoside monophosphate biosynthetic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0009156	ribonucleoside monophosphate biosynthetic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0009161	ribonucleoside monophosphate metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0009167	purine ribonucleoside monophosphate metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0009168	purine ribonucleoside monophosphate biosynthetic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0009987	cellular process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0016070	RNA metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0016423	tRNA (guanine) methyltransferase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0016840	carbon-nitrogen lyase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0016842	amidine-lyase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0016874	ligase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0016875	ligase activity, forming carbon-oxygen bonds	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:0019008	molybdopterin synthase complex	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0019637	organophosphate metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0019720	Mo-molybdopterin cofactor metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0019752	carboxylic acid metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0019843	rRNA binding	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0019899	enzyme binding	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0022618	protein-RNA complex assembly	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0031072	heat shock protein binding	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0031267	small GTPase binding	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0032324	molybdopterin cofactor biosynthetic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0034470	ncRNA processing	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0034641	cellular nitrogen compound metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0034660	ncRNA metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0042274	ribosomal small subunit biogenesis	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0043038	amino acid activation	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0043039	tRNA aminoacylation	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0043170	macromolecule metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:0043226	organelle	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:0043229	intracellular organelle	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0043436	oxoacid metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0043545	molybdopterin cofactor metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0044085	cellular component biogenesis	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0044237	cellular metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0044281	small molecule metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0046040	IMP metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0046483	heterocycle metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0051020	GTPase binding	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0051189	prosthetic group metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0051539	4 iron, 4 sulfur cluster binding	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0071704	organic substance metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0071826	protein-RNA complex organization	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0090304	nucleic acid metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0090407	organophosphate biosynthetic process	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0140098	catalytic activity, acting on RNA	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0140101	catalytic activity, acting on a tRNA	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0140640	catalytic activity, acting on a nucleic acid	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:1901360	organic cyclic compound metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:1901564	organonitrogen compound metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:1901566	organonitrogen compound biosynthetic process	IEP	Lactuca Sativa GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR017896	4Fe4S_Fe-S-bd	49	71
IPR003439	ABC_transporter-like_ATP-bd	365	496
IPR007209	RNaseL-inhib-like_metal-bd_dom	6	37
IPR003439	ABC_transporter-like_ATP-bd	102	244

External Links

No external refs found!

Lsat_1_v5_gn_6_17181.1 (ABCE2, ATRLI2, RLI2)

Expression Profile

Co-expression Networks

Functional Annotation