Lsat_1_v5_gn_6_107360.1

Description : small subunit of TFIIa basal transcription factor complex

Gene families : OG0038592 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Lactuca sativa (Lsa) PCC: Lsat_1_v5_gn_6_107360.1
Cluster	Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm): Cluster_139

Type	GO Term	Name	Evidence	Source
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005667	transcription regulator complex	None	Extended
CC	GO:0005672	transcription factor TFIIA complex	IEA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006352	DNA-templated transcription initiation	None	Extended
BP	GO:0006367	transcription initiation at RNA polymerase II promoter	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0032774	RNA biosynthetic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034654	nucleobase-containing compound biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
CC	GO:0090575	RNA polymerase II transcription regulator complex	None	Extended
CC	GO:0140513	nuclear protein-containing complex	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000786	nucleosome	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0005048	signal sequence binding	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006325	chromatin organization	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006334	nucleosome assembly	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006338	chromatin remodeling	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006487	protein N-linked glycosylation	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006621	protein retention in ER lumen	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:0008250	oligosaccharyltransferase complex	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:0030008	TRAPP complex	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0032507	maintenance of protein location in cell	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:0032993	protein-DNA complex	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0033218	amide binding	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0034728	nucleosome organization	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:0034998	oligosaccharyltransferase I complex	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0035437	maintenance of protein localization in endoplasmic reticulum	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0042277	peptide binding	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0045185	maintenance of protein location	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0046923	ER retention sequence binding	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0051235	maintenance of location	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0051651	maintenance of location in cell	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0065004	protein-DNA complex assembly	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0071824	protein-DNA complex organization	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0072595	maintenance of protein localization in organelle	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:0099023	vesicle tethering complex	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:0140534	endoplasmic reticulum protein-containing complex	IEP	Lactuca Sativa GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR015872	TFIIA_gsu_N	4	49
IPR015871	TFIIA_gsu_C	60	91

External Links

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Lsat_1_v5_gn_6_107360.1

Expression Profile

Co-expression Networks

Functional Annotation