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Aliases : SCA3, PDE319
Description : nuclear-encoded organellar RNA polymerase *(NEP)
Gene families : OG0004974 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0004974_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Lactuca sativa (Lsa) PCC: Lsat_1_v5_gn_5_89101.1 | |
| Cluster | Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm): Cluster_47 |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0000154 | rRNA modification | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0000166 | nucleotide binding | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0000295 | adenine nucleotide transmembrane transporter activity | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0001510 | RNA methylation | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0003676 | nucleic acid binding | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0003690 | double-stranded DNA binding | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0003723 | RNA binding | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0003747 | translation release factor activity | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0003755 | peptidyl-prolyl cis-trans isomerase activity | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0004832 | valine-tRNA ligase activity | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0005346 | purine ribonucleotide transmembrane transporter activity | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0005347 | ATP transmembrane transporter activity | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0005471 | ATP:ADP antiporter activity | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0005488 | binding | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0005524 | ATP binding | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0005525 | GTP binding | IEP | Lactuca Sativa GO terms from Neighborhoods |
| CC | GO:0005634 | nucleus | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0006298 | mismatch repair | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0006364 | rRNA processing | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0006396 | RNA processing | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0006415 | translational termination | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0006438 | valyl-tRNA aminoacylation | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0006457 | protein folding | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0006862 | nucleotide transport | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0008079 | translation termination factor activity | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0008135 | translation factor activity, RNA binding | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0008168 | methyltransferase activity | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0008514 | organic anion transmembrane transporter activity | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0008649 | rRNA methyltransferase activity | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0008757 | S-adenosylmethionine-dependent methyltransferase activity | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0015215 | nucleotide transmembrane transporter activity | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0015216 | purine nucleotide transmembrane transporter activity | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0015217 | ADP transmembrane transporter activity | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0015605 | organophosphate ester transmembrane transporter activity | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0015748 | organophosphate ester transport | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0015931 | nucleobase-containing compound transport | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0015932 | nucleobase-containing compound transmembrane transporter activity | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0016070 | RNA metabolic process | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0016072 | rRNA metabolic process | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0016741 | transferase activity, transferring one-carbon groups | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0016853 | isomerase activity | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0016859 | cis-trans isomerase activity | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0016887 | ATP hydrolysis activity | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0017076 | purine nucleotide binding | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0019001 | guanyl nucleotide binding | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0022411 | cellular component disassembly | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0022613 | ribonucleoprotein complex biogenesis | IEP | Lactuca Sativa GO terms from Neighborhoods |
| CC | GO:0030684 | preribosome | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0030983 | mismatched DNA binding | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0031167 | rRNA methylation | IEP | Lactuca Sativa GO terms from Neighborhoods |
| CC | GO:0032040 | small-subunit processome | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0032259 | methylation | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0032553 | ribonucleotide binding | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0032555 | purine ribonucleotide binding | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0032561 | guanyl ribonucleotide binding | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0032984 | protein-containing complex disassembly | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0034470 | ncRNA processing | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0034660 | ncRNA metabolic process | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0035639 | purine ribonucleoside triphosphate binding | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0036094 | small molecule binding | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0042254 | ribosome biogenesis | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0043168 | anion binding | IEP | Lactuca Sativa GO terms from Neighborhoods |
| CC | GO:0043226 | organelle | IEP | Lactuca Sativa GO terms from Neighborhoods |
| CC | GO:0043227 | membrane-bounded organelle | IEP | Lactuca Sativa GO terms from Neighborhoods |
| CC | GO:0043229 | intracellular organelle | IEP | Lactuca Sativa GO terms from Neighborhoods |
| CC | GO:0043231 | intracellular membrane-bounded organelle | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0043933 | protein-containing complex organization | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0044085 | cellular component biogenesis | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0044183 | protein folding chaperone | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0045182 | translation regulator activity | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0046483 | heterocycle metabolic process | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0051082 | unfolded protein binding | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0070037 | rRNA (pseudouridine) methyltransferase activity | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0070475 | rRNA base methylation | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0071840 | cellular component organization or biogenesis | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0090079 | translation regulator activity, nucleic acid binding | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0090304 | nucleic acid metabolic process | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0097159 | organic cyclic compound binding | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0097367 | carbohydrate derivative binding | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0140102 | catalytic activity, acting on a rRNA | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0140662 | ATP-dependent protein folding chaperone | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:1901265 | nucleoside phosphate binding | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:1901360 | organic cyclic compound metabolic process | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:1901363 | heterocyclic compound binding | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:1901505 | carbohydrate derivative transmembrane transporter activity | IEP | Lactuca Sativa GO terms from Neighborhoods |
| CC | GO:1990904 | ribonucleoprotein complex | IEP | Lactuca Sativa GO terms from Neighborhoods |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR029262 | RPOL_N | 155 | 470 |
| No external refs found! |